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Report for Sequence Feature Glyma.11g166600

Feature Type:gene_model
Chromosome:Gm11
Start:16173269
stop:16174998
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g166600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19070.1AT spermidine hydroxycinnamoyl transferase JGI N/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups EnsemblGenomesN/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups JGI N/AIEA
PF02458PFAM Transferase family JGI N/AIEA
PWY-361SoyCyc9 phenylpropanoid biosynthesis Plant Metabolic Network ISS
PWY-6039SoyCyc9 chlorogenic acid biosynthesis I Plant Metabolic Network ISS
PWY-6040SoyCyc9 chlorogenic acid biosynthesis II Plant Metabolic Network ISS
PWY-6320SoyCyc9 phaselate biosynthesis Plant Metabolic Network ISS
GN7V-63725SoyCyc9-rxn shikimate O-hydroxycinnamoyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.11g166600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g166600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g29070 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g166600
>Glyma.11g166600.1 sequence-type=CDS polypeptide=Glyma.11g166600.1.p locus=Glyma.11g166600 ID=Glyma.11g166600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAACCATTGTGGCTTCTTACAACATCACTCCAAATCAACCAACTCCAAAGGACCCTTTATGGCTATCCGATAGTGACCAAATCGGGGTCCTAGGTCATGTATCCATTCTCTACATTTACAGATCAGCAAAAGAACACAACAACAACACCGTTGAGAGGATGAAGAACTCTCTTAGCAAGCTTCTATCGTACTACTATCCAGTAGCTGGCAGGTTAAGGTTGTCAAAAAGTGGTCGAATGGAATTGGATTGCAACGCAAAGGGAGTGACATTGCTTGAAGCCGAAACCACAAACACATTTGTTGATTATGGAGACGACTTTTCACCGTCCGAGTTCACCGATGAACTCATTCCAAAACTTGATGATACTCAACAACCTATAGAGGAGATTCCCCTACTGCTGGTGCAATTAACAAGGTTCCATAGTGGTGGTGATTGTGAAGGCCTTGCCATTGGAGTTCTTCTATCTCATCCTTTGACCGATGCCACCGGCATCATTGACTTCATGAACAGATGGGCAAAGCTGTCTCGGGGAGAAGAACTAGACCCTAATGAAATCCCGTTTCTTGATCGAACACTACTCAAATTCCCAGACATTTTGTTGGAGAAACCGAGGGAAGTAAATACTAGAGAGATTAGTAAACTTGACACCAGTACACTTCAACATATTCCAACATCAAAACTGTTAGATCAGTGGAAGAAGCCTGTGGTGCCACAAACACCAGAAGATGATGGGATAGATAAGCCAAAGAAGAGAAGTGGTGCAATGCTAAAACTCACATCAAGCCAGGTGGAGAGGCTAAAGAATAAGGCTATGGCTAATAACCATCAATCTTCAAAACAAGGGTCAAGACCTAATTATAGCAGATTTGAAGTTGTTGCTGCTCATATATGGAGGTGTGCATCTAAGGCTCTTGGTGATGACCTAACTCAAGTTCGGTTCAGTGTTAATTTTCGCAATAGAATGAACCCACCTCTCCCTCATAACTATTTTGGCAATGCTGTGGCAAACGTAGCCACACCTGAGGGAGATATCATATCAAACCCATTAGGTTTTGCTGCTCATAAGATAAGGGAAGCATCTCATGCAGTCACGGACGAGTTTGTAAAGTCACAATTAAACGTTAGTCGTTTAGGCCAAGTGCAATTGGATAACATAAGGGCTTTCTTCATGCGACAAGGACACCGTGTGAATATCCCTTATGCTTTGAATCATAATGTTTTGTTCCTCACAAGCTTCACTAACATGCCAGTGTATGAATCAGATTTTGGTTGGGGAAAGCCAGTGCATTTTGGCTTAGCAAGTAGATCTCCAGCAGATAGGGCTGCAATTCTTCCAAGCCCAGATGGAGATGGTGTTATTGTAGCCTTATTTTTTCAGACAGCACTTATGCAGCTTTTCAAAAATTACTTTTATGAGGATATGTATTTATCCTTGTTATAG
Predicted protein sequences of Glyma.11g166600
>Glyma.11g166600.1.p sequence-type=predicted peptide transcript=Glyma.11g166600.1 locus=Glyma.11g166600 ID=Glyma.11g166600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKTIVASYNITPNQPTPKDPLWLSDSDQIGVLGHVSILYIYRSAKEHNNNTVERMKNSLSKLLSYYYPVAGRLRLSKSGRMELDCNAKGVTLLEAETTNTFVDYGDDFSPSEFTDELIPKLDDTQQPIEEIPLLLVQLTRFHSGGDCEGLAIGVLLSHPLTDATGIIDFMNRWAKLSRGEELDPNEIPFLDRTLLKFPDILLEKPREVNTREISKLDTSTLQHIPTSKLLDQWKKPVVPQTPEDDGIDKPKKRSGAMLKLTSSQVERLKNKAMANNHQSSKQGSRPNYSRFEVVAAHIWRCASKALGDDLTQVRFSVNFRNRMNPPLPHNYFGNAVANVATPEGDIISNPLGFAAHKIREASHAVTDEFVKSQLNVSRLGQVQLDNIRAFFMRQGHRVNIPYALNHNVLFLTSFTNMPVYESDFGWGKPVHFGLASRSPADRAAILPSPDGDGVIVALFFQTALMQLFKNYFYEDMYLSLL*






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