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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30200.1 | AT | catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding | JGI | N/A | IEA |
| GO:0006633 | GO-bp | fatty acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004314 | GO-mf | [acyl-carrier-protein] S-malonyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG2926 | KOG | Malonyl-CoA:ACP transacylase | JGI | N/A | IEA |
| PTHR10982 | Panther | MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE | JGI | N/A | IEA |
| PF00698 | PFAM | Acyl transferase domain | JGI | N/A | IEA |
| PWY-4381 | SoyCyc9 | fatty acid biosynthesis initiation I | Plant Metabolic Network | ISS | |
| PWY-5156 | SoyCyc9 | superpathway of fatty acid biosynthesis II (plant) | Plant Metabolic Network | ISS | |
| PWY-6799 | SoyCyc9 | fatty acid biosynthesis (plant mitochondria) | Plant Metabolic Network | ISS | |
| PWY-7388 | SoyCyc9 | octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | Plant Metabolic Network | ISS | |
| GN7V-62419 | SoyCyc9-rxn | fatty-acyl-CoA synthase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| FabD | malonyl-CoA:ACP malonyltransferase |
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Glyma.11g164500 not represented in the dataset |
Glyma.11g164500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g057700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g29490 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g164500.1 sequence-type=CDS polypeptide=Glyma.11g164500.1.p locus=Glyma.11g164500 ID=Glyma.11g164500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTTCCTCTCTCGTTCTTCCTTCCACTCCCTTCTTCGCCCATGGAACAAGAACCCTCCCTCTCACTCGATCTAGGCTTTCCATGACCGTCTCCGCCGGATCTCAGCCTTCTCTCCGCGACGCTCTGTTCGCCGATTACAAGGCCTCCACTTCATTCCTCTTCCCCGGCCAGGGTGCTCAAGCTGTTGGAATGGGGAAAGAAGCTCAGAATGTGCCTACTGCTGCGGTTTTGTTCAACAAGGCAAACGACGTATTGGGGTTTGATCTTCTTGATATATGCATCAATGGGCCAAAAGAAAAGCTAGATTCAACTGTTATCAGCCAGCCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAAGCCTGGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTTAGCTTTGAAGATGGACTCAAGTTGGTCAAACTGAGGGGTGAGGCCATGCAGGATGCCGCTGATGCTGCTAAAAGTGCTATGGTTAGTGTGATAGGACTGGACTCAGAGAAGGTCCAACAATTGTGTGATGCAGCCAATCAGGAAGTTCCTGAAGCTGAGAAGGTTCAGATTGCCAATTACCTGTGCCCAGGAAACTATGCTGTCTCCGGGGGATTAAAAGGAGTAGAAGTGCTGGAATCCAAGGCAAAGTCTTTCAAGGCTCGAATGACGGTGCGCCTAGCTGTTGCTGGTGCTTTCCACACTAGTTTTATGAAACCAGCTGTGTCAAGGTTGGAAGCAGCATTGGCAACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTGACTCAATAAAGAAGATATTGGCATGCCAGGTTACCTCACCTGTTCAATGGGAAACAACAGTGCAGACTCTTCTAACCAAGGGTCTGAAGAAAAGCTATGAACTCGGACCCGGAAAGGTTATTGCTGGAATCATCAAAAGAACGGACAAAGGTGCTGATATTGAAAATATTGGGGCTTAG
>Glyma.11g164500.1.p sequence-type=predicted peptide transcript=Glyma.11g164500.1 locus=Glyma.11g164500 ID=Glyma.11g164500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSSLVLPSTPFFAHGTRTLPLTRSRLSMTVSAGSQPSLRDALFADYKASTSFLFPGQGAQAVGMGKEAQNVPTAAVLFNKANDVLGFDLLDICINGPKEKLDSTVISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGEAMQDAADAAKSAMVSVIGLDSEKVQQLCDAANQEVPEAEKVQIANYLCPGNYAVSGGLKGVEVLESKAKSFKARMTVRLAVAGAFHTSFMKPAVSRLEAALATTEIRTPRIPVISNVNAQPHTDPDSIKKILACQVTSPVQWETTVQTLLTKGLKKSYELGPGKVIAGIIKRTDKGADIENIGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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