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Report for Sequence Feature Glyma.11g162800

Feature Type:gene_model
Chromosome:Gm11
Start:15225720
stop:15232283
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g162800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26110.1AT Protein kinase superfamily protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
PTHR12209Panther O-SIALOGLYCOPROTEIN ENDOPEPTIDASE JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Expression Patterns of Glyma.11g162800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g162800 not represented in the dataset
Glyma.11g162800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g162800
ParalogEvidenceComments
Glyma.18g056100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.11g162800
>Glyma.11g162800.1 sequence-type=CDS polypeptide=Glyma.11g162800.1.p locus=Glyma.11g162800 ID=Glyma.11g162800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAATATTAGGAAGATTGAAGCTGACAAATTCTGCTCAAGCAAGGAGCTTGGAAGTAACCTCACCAAAAACATCCCAAAAAGTTACTCTCTTTATTTCTCCATTGAACCAAGTATAGTGGACTTCTATATCATAGGCTCCCTACAAAAGAAAATTTACTTAGAAGGAATATTATTGTGGATGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTATCGAAGAGTCATACAAAGCAATTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCAAAAGACAAGCCTGTCCATTTGTATGTAGTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGAAAACCAAGGAAATGAAAACAGGGTTTTGTTTTTCTGTTATGAAAATTTGA
Predicted protein sequences of Glyma.11g162800
>Glyma.11g162800.1.p sequence-type=predicted peptide transcript=Glyma.11g162800.1 locus=Glyma.11g162800 ID=Glyma.11g162800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLNIRKIEADKFCSSKELGSNLTKNIPKSYSLYFSIEPSIVDFYIIGSLQKKIYLEGILLWMLHDGGLIHGDLTTSNMLSKSHTKQLVLIDFGLSFTSTLPKDKPVHLYVVERALISMHSSCGNVKTKEMKTGFCFSVMKI*






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