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Report for Sequence Feature Glyma.11g162300

Feature Type:gene_model
Chromosome:Gm11
Start:15066268
stop:15067707
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g162300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44530.1AT homolog of histone chaperone HIRA JGI N/AIEA
GO:0006325GO-bp chromatin organization EnsemblGenomesN/AIEA
GO:0006336GO-bp DNA replication-independent nucleosome assembly EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0031935GO-bp regulation of chromatin silencing EnsemblGenomesN/AIEA
GO:1903507GO-bp negative regulation of nucleic acid-templated transcription EnsemblGenomesN/AIEA
GO:0000790GO-cc nuclear chromatin EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003714GO-mf transcription corepressor activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0031491GO-mf nucleosome binding EnsemblGenomesN/AIEA
PTHR13831Panther MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS JGI N/AIEA
PF07569PFAM TUP1-like enhancer of split JGI N/AIEA

Expression Patterns of Glyma.11g162300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g162300 not represented in the dataset
Glyma.11g162300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g162300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g29854 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g162300
>Glyma.11g162300.1 sequence-type=CDS polypeptide=Glyma.11g162300.1.p locus=Glyma.11g162300 ID=Glyma.11g162300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTAGCCCTGGCCTCGGTGTCATCTCTGTGGCCGCCAACCCCCTTCGTCACTGCCTCCTCCTCCCTCGGTAACTTCGTTCGCATCTTCGATGTCAATTCCAACGCCACCATTGCAACACTCGAGGCTCCTCCCTCTGAAGTTGAAGTTTCGCAAATGCACTTTGATCCCAAGAGAGAAATAACAGTGCAAGAAACAGAAATTGTGTGCTCTAAGGGCCCTCAAACACTTTGGTCTGCTAGGATATCAGGAAAAGTCACTGTTTTAGCTGGTAATGGAAATTTTTGGAGAGTTGGATGTGAAGATGGATGTCTGCAGATTTACACAAAGTGTGGGAGACGTGCAATGCCTACCATGATGATGGGTTCTGCAGCAACATTTGTAGACTGTGATAAATGTTGGACATTACTGCTGGTCACAAGAAAAGGATCCCTGTACTAG
Predicted protein sequences of Glyma.11g162300
>Glyma.11g162300.1.p sequence-type=predicted peptide transcript=Glyma.11g162300.1 locus=Glyma.11g162300 ID=Glyma.11g162300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLALASVSSLWPPTPFVTASSSLGNFVRIFDVNSNATIATLEAPPSEVEVSQMHFDPKREITVQETEIVCSKGPQTLWSARISGKVTVLAGNGNFWRVGCEDGCLQIYTKCGRRAMPTMMMGSAATFVDCDKCWTLLLVTRKGSLY*






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