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Report for Sequence Feature Glyma.11g161600

Feature Type:gene_model
Chromosome:Gm11
Start:14899161
stop:14904172
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g161600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58390.1AT Peroxidase superfamily protein JGI N/AIEA
GO:0006979GO-bp response to oxidative stress EnsemblGenomesN/AIEA
GO:0006979GO-bp response to oxidative stress JGI N/AIEA
GO:0042744GO-bp hydrogen peroxide catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0098869GO-bp cellular oxidant detoxification EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0004601GO-mf peroxidase activity EnsemblGenomesN/AIEA
GO:0004601GO-mf peroxidase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00141PFAM Peroxidase JGI N/AIEA
GN7V-59541SoyCyc9-rxn peroxidase Plant Metabolic Network ISS

Expression Patterns of Glyma.11g161600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g161600
ParalogEvidenceComments
Glyma.18g055300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g161600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g30010 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g161600
>Glyma.11g161600.1 sequence-type=CDS polypeptide=Glyma.11g161600.1.p locus=Glyma.11g161600 ID=Glyma.11g161600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTTTCTCCTATTCGTTCTTCTACTTTCTCTTCATCATCAGCTATTGTTACATTAGCTGTGTTACTTCTTCTTACAAGGACCTCTTCAGCTACCCTCTCAAAGAACTTCTATTCTAAGACATGTCCAAACGTTTTCAACACGGTAAAATCTGTAGTAAAATCTGCTGTGGCCAAAGAACCTCGCATTGGAGCTTCTATTGTTCGCCTCTTCTTCCATGACTGCTTTGTTCAAGGTTGTGATGGATCAATACTACTTGATGACACTCCAACCTTCCAGGGGGAGAAGACTGCAGCTGCTAACAACAATTCAGTGAGAGGTTATGAATTAATCGATGATATCAAGTCTAAGGTCGAGAAAATATGCCCCGGTGTGGTCTCATGTGCTGATATCTTGGACATTGCTTCTCGTGACTCTGTTGTTCTTCTTGGAGGACCATTTTGGAATGTTAGACTTGGAAGAAGGGATTCTAGAAGTGCCAATTTCACTGCTGCAAACACTGGTGTTATTCCACCTCCCACATCTAACCTCACCAACCTTATCACAAGGTTTCAAGATCAAGGACTCTCTGCTAGGGACATGGTTGCCTTATCTGGAGCTCACACATTTGGCAAAGCAAGGTGTACTAGTTTCAGAGATCGCATATACAATCAAACCAACATTGACAGAACATTTGCATTGGCCAGGCAGAGGAGGTGCCCTAGGACCAATGGCACAGGTGACAACAATCTAGCAAATCTAGACTTCAGAACTCCAAATCATTTTGACAACAACTACTTCAAAAACCTTCTCATTAAAAGGGGACTCCTCAATTCTGATCAAGTGCTTTTCAATGGTGGATCCACTGATTCACTGGTCAGAACATACAGCCAGAATAACAAGGCCTTTGATTCTGACTTTGTTAAAGCAATGATTAGGATGGGAGATATCAAACCCTTAACTGGGTCACAAGGGGAGATTAGGAAGAACTGCAGGAGAGTGAATTAA
Predicted protein sequences of Glyma.11g161600
>Glyma.11g161600.1.p sequence-type=predicted peptide transcript=Glyma.11g161600.1 locus=Glyma.11g161600 ID=Glyma.11g161600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSPIRSSTFSSSSAIVTLAVLLLLTRTSSATLSKNFYSKTCPNVFNTVKSVVKSAVAKEPRIGASIVRLFFHDCFVQGCDGSILLDDTPTFQGEKTAAANNNSVRGYELIDDIKSKVEKICPGVVSCADILDIASRDSVVLLGGPFWNVRLGRRDSRSANFTAANTGVIPPPTSNLTNLITRFQDQGLSARDMVALSGAHTFGKARCTSFRDRIYNQTNIDRTFALARQRRCPRTNGTGDNNLANLDFRTPNHFDNNYFKNLLIKRGLLNSDQVLFNGGSTDSLVRTYSQNNKAFDSDFVKAMIRMGDIKPLTGSQGEIRKNCRRVN*






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