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Report for Sequence Feature Glyma.11g154900

Feature Type:gene_model
Chromosome:Gm11
Start:12643089
stop:12645488
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g154900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
GO:0007275GO-bp multicellular organism development EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall EnsemblGenomesN/AIEA
GO:0005199GO-mf structural constituent of cell wall EnsemblGenomesN/AIEA
GO:0005199GO-mf structural constituent of cell wall JGI N/AIEA
PF02095PFAM Extensin-like protein repeat JGI N/AIEA

Proteins Associated with Glyma.11g154900
LocusGene SymbolProtein Name
PRP3 repetitive proline-rich cell wall protein 3

Expression Patterns of Glyma.11g154900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g154900 not represented in the dataset
Glyma.11g154900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g154900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g21616 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g154900
>Glyma.11g154900.1 sequence-type=CDS polypeptide=Glyma.11g154900.1.p locus=Glyma.11g154900 ID=Glyma.11g154900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCTTTGTATCCTTCCTAGTGCTGCTTCTTGCAGCCCTTATCCTCATGCCTCAAGGGCTTGCTACTTACTACAAACCAATTAAGAAGCCACCAGTGTACAAGCCTCCAGTGTACAAGCCACCAGTGTACAAACCACCGGTTTATAAGCCAAAACCACCGGTTTACAAGCCGAAACCACCGGTTTACAAGCCACCATATAAGAAGCCACCATACAAGAAACCACCTTATGGAAAGTACCCTCCAGTAGAGGACAACACCCATGCCTAA
Predicted protein sequences of Glyma.11g154900
>Glyma.11g154900.1.p sequence-type=predicted peptide transcript=Glyma.11g154900.1 locus=Glyma.11g154900 ID=Glyma.11g154900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFVSFLVLLLAALILMPQGLATYYKPIKKPPVYKPPVYKPPVYKPPVYKPKPPVYKPKPPVYKPPYKKPPYKKPPYGKYPPVEDNTHA*






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