SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.11g153900

Feature Type:gene_model
Chromosome:Gm11
Start:12389260
stop:12396651
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g153900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61710.1AT AUTOPHAGY 6 JGI N/AIEA
GO:0000045GO-bp autophagosome assembly EnsemblGenomesN/AIEA
GO:0006914GO-bp autophagy EnsemblGenomesN/AIEA
GO:0006914GO-bp autophagy JGI N/AIEA
GO:0006995GO-bp cellular response to nitrogen starvation EnsemblGenomesN/AIEA
GO:0044804GO-bp autophagy of nucleus EnsemblGenomesN/AIEA
GO:0045324GO-bp late endosome to vacuole transport EnsemblGenomesN/AIEA
GO:0000407GO-cc phagophore assembly site EnsemblGenomesN/AIEA
GO:0031410GO-cc cytoplasmic vesicle EnsemblGenomesN/AIEA
GO:0034271GO-cc phosphatidylinositol 3-kinase complex, class III, type I EnsemblGenomesN/AIEA
GO:0034272GO-cc phosphatidylinositol 3-kinase complex, class III, type II EnsemblGenomesN/AIEA
KOG2751 KOG Beclin-like protein JGI N/AIEA
PTHR12768Panther BECLIN 1 JGI N/AIEA
PTHR12768:SF3Panther JGI N/AIEA
PF04111PFAM Autophagy protein Apg6 JGI N/AIEA

Proteins Associated with Glyma.11g153900
LocusGene SymbolProtein Name
ATG6 beclin 1 protein

Expression Patterns of Glyma.11g153900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g153900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g21490 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g153900
>Glyma.11g153900.1 sequence-type=CDS polypeptide=Glyma.11g153900.1.p locus=Glyma.11g153900 ID=Glyma.11g153900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAAGGGCGAAAATAAGGGCCGGACTCGGAGCTTCCCGGTGGATCCGAACGTGCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTCGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCGGGATGCAAGGGTCGTCCATTCATGGTGCCAGCAGTGTGCTGAGTACGACTAAAATGGACAATTCATATGTGGTGTTGCCCAAGCAGAGACCTCTGGCTCAGGGAAATGCTCCTCGGCCACGCGGTGATGCCGCTGCACAGCCTGGGAAGGCGATGGAGGAGTCATTTGTGGTTGTGTACAAGTCTGAATCGGGGATTGATGGAAACGGGGCGCATTTGTTGGGCACAGGGGCTGATTCTGGTGGCCATTTGCCGCCTCATAACTCTGGGTTTAATTCTACTATTACTGTCCTGACTCGAGCATTTGAGATTGCCACGACACAGACGCAGGTTGAACAGCCTTTGTGCCTTGACTGCATGAGGATTTTGTCAGATAAGCTTGATAAAGAGGTTGAAGATGTCAACAGGGACATTGAAGCATATGAAGCCTGTCTTAAACGCTTGGAAGGGGAGGCTAGAGATCTCCTCAGTGAGGCTGATTTTCTTAAAGAGAAATTGAAGATTGAGGAAGAAGAACGAAGACTTGAAGCAGTAATTGAAGAAACCGAGAGACAGAATGCTGAAGTAAATGCTGAACTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGAGGAGCGGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAGGAGGAGAGAGATGCAATTTTGGCCAAGATTGAAGTTTCACAAGCACATTTAGAATTATTGAAGCGTACAAATGTGCTCAATGATGCCTTCCCCATTTCTCATGATGGAGAGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCAATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACATTGTTTTTAGCATGCCTCAAGGATTTTGCAGACTTTGCCAAATCCAAGGATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAGCAGGAAAATTGGACTAAATCTCTCAAGTACACTCTTTGCAATTTGAAATGGGCTCTCTATTGGTTTGTTGGAAATACTAACTTCCAGCCTCTTTCAGCAATGGTATCTTCGCATGCTGAAGTGCCGGCGGTTGGGCCTCTGTACACGAAGCGTGGTGTTGATGCCAAATCTGAATCTCGAAACTGA
Predicted protein sequences of Glyma.11g153900
>Glyma.11g153900.1.p sequence-type=predicted peptide transcript=Glyma.11g153900.1 locus=Glyma.11g153900 ID=Glyma.11g153900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKGENKGRTRSFPVDPNVPRWVCQNCRNPLCIVGADSYADKFFNDPSRSGMQGSSIHGASSVLSTTKMDNSYVVLPKQRPLAQGNAPRPRGDAAAQPGKAMEESFVVVYKSESGIDGNGAHLLGTGADSGGHLPPHNSGFNSTITVLTRAFEIATTQTQVEQPLCLDCMRILSDKLDKEVEDVNRDIEAYEACLKRLEGEARDLLSEADFLKEKLKIEEEERRLEAVIEETERQNAEVNAELRELELKSSRFNELEERYWHEFNNFQFQLISHQEERDAILAKIEVSQAHLELLKRTNVLNDAFPISHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFQYRIKIIPMGSYPRITDTNNSTYELFGPVNLFWSTRYDKAMTLFLACLKDFADFAKSKDQENNIPPEKCFKLPYKIENDKVENYSITQSFNKQENWTKSLKYTLCNLKWALYWFVGNTNFQPLSAMVSSHAEVPAVGPLYTKRGVDAKSESRN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo