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Report for Sequence Feature Glyma.11g149200

Feature Type:gene_model
Chromosome:Gm11
Start:11611414
stop:11614759
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g149200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13460.1AT IQ-domain 11 JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR13140Panther MYOSIN JGI N/AIEA
PTHR13140:SF198Panther JGI N/AIEA
PF00612PFAM IQ calmodulin-binding motif JGI N/AIEA

Proteins Associated with Glyma.11g149200
LocusGene SymbolProtein Name
IQD39 protein IQ-DOMAIN 39

Expression Patterns of Glyma.11g149200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g149200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g20880 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g149200
>Glyma.11g149200.1 sequence-type=CDS polypeptide=Glyma.11g149200.1.p locus=Glyma.11g149200 ID=Glyma.11g149200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTAAGAAGGGTTGGTTTAGCATGTTTAAGAAGCTCTTTTTATGGAACACACATTCCTCACAAGAGAAGAAGGAGAAAAGAAGAAGGGCTTGGATATTTGGGAGGGTTAAGACCAAGAGATTGCCTTCAATTACAGCTCCACCACCACCACCTTCAAAAGAAACAAGACTAAGTGAGGCTGAGGAAGAACACAGCAAGCATGCTTTGACAGTGGCCATTGCTTCAGCTGCTGCTGCTGAAGCTGCTATTACTGCAGCTCAGGTTGCTGTTGAGGTTGTTAGGCTCCAATCTGCTGCTCATCTACAACTTAAAGAAAAACAAGAACAACTTCAATTACAACCTGTTAAAACTAGCCATGATGCTCCTCAGAATACACACCAACGCCAGAGGAAGATTCAAGAATCTTCAGCCATCAAAATTCAAACAGCATATAGAGGTTACCTAGCAAGGAAAGCTTTGAGAGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGAAGAGCTGTGAGACGCCAAGCTTTGAGTACTCTAAAGTGCTTAGAGTCAATAGTAAGTATCCAATCACAGGTCTTCGCAAGGAAATCCCAAATGGTTGAAGAAAGATGGGATTGTGGTGAACATGAAGAGATGCAAGGTTCAAGAGACAAGATAATAAGGATGGACTCAAACAGTGAGAGAACGTGGGATGACAGCATTTTGTTGAAGGAAGAGGTAGATGCCTCTTGCGTAAGCAAGAAAGAAGCAGTTCTTAAGAGAGAAAAAGTAAAAGAATACTCATTTAACCACAGAAGGTCAGCTGAATCAGAAAGAAATAAAATAAATGGAAGATGGAGGTACTGGATGGAGCAGTGGGTAGACACACAACTTTCTAAGAGTAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCACATTATTCTAGACCTGGGGAGGAATGTGGAAGGAGACAACTAAAGCTTAGAAATTTTCAGAGACAAAACCAGATTGAAGCATTAGATTCTCCATCACTTTCTTCAAGGAACCAAACTTCAGGGGCAGAAGATCACTCAGTTCCAAGCTCTCCTGCAATTCCTACATACATGGCTGCAACAAAATCAACACAAGCAAAAGCAAGATCAACAAGCTCCCCAAGAGCAAGGATAGGAGGGAATTTTGACATCAACTCTGATAGCTATTCACCATGCAAGAATAAGTTACCTATTGTGACTTCTATTAATGGTGAAGTGCTTAGTAATGGTAGGATTGGCAAGCTCAGCAGTAATCAGCAAAGATCACCTAGCTTAAAGGGCCTTCCAAGACCTCTAAAATTAAGTCAAACATTGAGGGGTCTTAGCATTAATTCAGATTGCCCAGTGCCAATTTGA
Predicted protein sequences of Glyma.11g149200
>Glyma.11g149200.1.p sequence-type=predicted peptide transcript=Glyma.11g149200.1 locus=Glyma.11g149200 ID=Glyma.11g149200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKKGWFSMFKKLFLWNTHSSQEKKEKRRRAWIFGRVKTKRLPSITAPPPPPSKETRLSEAEEEHSKHALTVAIASAAAAEAAITAAQVAVEVVRLQSAAHLQLKEKQEQLQLQPVKTSHDAPQNTHQRQRKIQESSAIKIQTAYRGYLARKALRALKGIVKLQAIIRGRAVRRQALSTLKCLESIVSIQSQVFARKSQMVEERWDCGEHEEMQGSRDKIIRMDSNSERTWDDSILLKEEVDASCVSKKEAVLKREKVKEYSFNHRRSAESERNKINGRWRYWMEQWVDTQLSKSKELEDLDSVFSSHYSRPGEECGRRQLKLRNFQRQNQIEALDSPSLSSRNQTSGAEDHSVPSSPAIPTYMAATKSTQAKARSTSSPRARIGGNFDINSDSYSPCKNKLPIVTSINGEVLSNGRIGKLSSNQQRSPSLKGLPRPLKLSQTLRGLSINSDCPVPI*






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