Glyma.11g136600

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Report for Sequence Feature Glyma.11g136600

Feature Type:	gene_model
Chromosome:	Gm11
Start:	10366710
stop:	10369847
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g136600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46640.1	AT	Homeodomain-like superfamily protein	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003682	GO-mf	chromatin binding	JGI	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
PF00249	PFAM	Myb-like DNA-binding domain	JGI	N/A	IEA

Proteins Associated with Glyma.11g136600

Locus	Gene Symbol	Protein Name
	LUXC	transcription factor LUXc

Expression Patterns of Glyma.11g136600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g136600

Paralog	Evidence	Comments
Glyma.12g060200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g136600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g14490	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g136600

Limit To All Plant Sequences

>Glyma.11g136600.2 sequence-type=transcript locus=Glyma.11g136600 ID=Glyma.11g136600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAACATAATTAGCAGCATTATTTCATTCATCTTTGTTCATTATATCCCCCTTCCTCACCGCCGAATCTCACGAAATATCTTCCCAACACAAGAAATTGAATTTGTGttttccttgtccttttcatcttccattctcttttcTCaatccaaatccaaatccaaatccaaatccaaatccaaatcTATCCCTCCTTAGTTTTTTTTACTCTTCGGATCCAAATTCAATACCGTAACTGTTTCAGTTTCAGTTTCAGTTTCACACACATATATActctctctctctctctctctctctctGTTTGGGTTAGGGACATAGAAGAAGAGTGTGTGAGAGATACACGGTTAAATTTGTTTTGTTTTATATACGGTTAGAACTAACTGAATGGGGGAAGAGGTGAAGACGAGCGAGTACGACGAAGAGCGCGTGATGGAGTGGGAGGCGGGTCTCCCAACTGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATCCCGCCGGAACTCGCGTCGGCCTTCAGCATCTTGCCGGAGCCCCACCGCACCCTCCTCGACGTCAACCGCGCCTCTCGCAACACGCTCTCCACGCTCCGCGGCGGCGGAGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAacaacaaccacaactacgacggcgacggcgacggaggcgtcgaggaggaggaggacgacgacgacgatcgcgacgGCTCGGGGCCGGATTCACGGAAGCAGCGGAAGATCGACTGCGGCGCGGCCGAGGAGGCGGACTCGGCGGTTCAGACGGAGACCTCGGCGGAGCGGACGGCGGTGAAGCGGCCGCGGCTGGTGTGGACCCCACAGCTTCACAAGAGGTTCGTTGACGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAATTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTCGCAAGCCATCTCCAGAAGTATCGTCTCTACCTGAAACGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTGCTTCGGATCAGTTATTTGCGTCGACACCTGTGCCTCAGAGCTTGCATGACTCTGCTCCTCCCAGTAACCATAGCAatggtcatggtcatgggcatggccatagcaatggccgtggtcatggtcatggtcatggtcatggtcatCTCTCTGTTCCGATGatgtccatgccatatccacctcccctgatgtccatgccatatccacctcccatgATGTCGGGCATGCCCCATGGCCACATGGGCATCCCCATGCCTAATTCCTCCGCCACCTCAGCTTACCATCCTTATAATATGTTGCATCAAAGGGATTGGCCTCACCTTGCTCCTAATGATAAATGAACCTATAAGGTCAGCCATCACCATCATATGCAAAAGATTCAAAGGCTTGATTATTGGTAGTATAGCTTTCTGAGAAGGGAGGAGCTGCATTGATGATTACCCTGTAATTCACTCAAAAGGATTATTGAGGAAGTATATGAAGAAGAGTATATGGAGCTAGATTACAATCTTAGTCAGTAGTGTGTATCCTGTGGGAGATTTACAAACTTATTGGTACACATCTCTAATTCCTGTCACCTAATTGTATGACGAGAATTCTGGCTTATTTCTTCTGGTCTGCCTAGACAGCTGATTCTAAAAACCATTGAATAAAAGAAAGACTGAACAACAGACAGCAAACATTTATACCAATGCTCTGGCATTAAATGTTTTTCTTTATCTTATAGCCTTGATCATTATTTATTTCCTTTGAAAGAGATGTTCCATTTTTTTGAATTGGGTGCTGTAGGCTCTCATGTTAAAGAAATGGTACACTGGGAGTGGAACGGGAGAATTTTTACCTTGTGTAACACACGCATACACACATTCCGACCTGGGGAATTCTTGTTTAACCCATAACGCAATTCACTTGTCTCCTTTTTCCTGTGAGAATTTCAACTGGACTTGCTGTCTTTTTGGTGGTAATGAACAAAACCTCCACCATTCTATGGTTTAATCGATTAAAAGAGTATGCACTCTTACGAGAAAGGCAAAAATCTATTTTGAGCAAAATAAATAGGAGTTTGGGGAAGATCGATATTCTGAGTTTTTTTACTTCTTGGGCAATTTATCATTATATATTGGACCCGTTCATC

Coding sequences of Glyma.11g136600

Limit To All Plant Sequences

>Glyma.11g136600.1 sequence-type=CDS polypeptide=Glyma.11g136600.1.p locus=Glyma.11g136600 ID=Glyma.11g136600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGAAGAGGTGAAGACGAGCGAGTACGACGAAGAGCGCGTGATGGAGTGGGAGGCGGGTCTCCCAACTGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATCCCGCCGGAACTCGCGTCGGCCTTCAGCATCTTGCCGGAGCCCCACCGCACCCTCCTCGACGTCAACCGCGCCTCTCGCAACACGCTCTCCACGCTCCGCGGCGGCGGAGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACAACCACAACTACGACGGCGACGGCGACGGAGGCGTCGAGGAGGAGGAGGACGACGACGACGATCGCGACGGCTCGGGGCCGGATTCACGGAAGCAGCGGAAGATCGACTGCGGCGCGGCCGAGGAGGCGGACTCGGCGGTTCAGACGGAGACCTCGGCGGAGCGGACGGCGGTGAAGCGGCCGCGGCTGGTGTGGACCCCACAGCTTCACAAGAGGTTCGTTGACGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAATTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTCGCAAGCCATCTCCAGAAGTATCGTCTCTACCTGAAACGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTGCTTCGGATCAGTTATTTGCGTCGACACCTGTGCCTCAGAGCTTGCATGACTCTGCTCCTCCCAGTAACCATAGCAATGGTCATGGTCATGGGCATGGCCATAGCAATGGCCGTGGTCATGGTCATGGTCATGGTCATGGTCATCTCTCTGTTCCGATGATGTCCATGCCATATCCACCTCCCCTGATGTCCATGCCATATCCACCTCCCATGATGTCGGGCATGCCCCATGGCCACATGGGCATCCCCATGCCTAATTCCTCCGCCACCTCAGCTTACCATCCTTATAATATGTTGCATCAAAGGGATTGGCCTCACCTTGCTCCTAATGATAAATGA

>Glyma.11g136600.2 sequence-type=CDS polypeptide=Glyma.11g136600.2.p locus=Glyma.11g136600 ID=Glyma.11g136600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGAAGAGGTGAAGACGAGCGAGTACGACGAAGAGCGCGTGATGGAGTGGGAGGCGGGTCTCCCAACTGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATCCCGCCGGAACTCGCGTCGGCCTTCAGCATCTTGCCGGAGCCCCACCGCACCCTCCTCGACGTCAACCGCGCCTCTCGCAACACGCTCTCCACGCTCCGCGGCGGCGGAGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACAACCACAACTACGACGGCGACGGCGACGGAGGCGTCGAGGAGGAGGAGGACGACGACGACGATCGCGACGGCTCGGGGCCGGATTCACGGAAGCAGCGGAAGATCGACTGCGGCGCGGCCGAGGAGGCGGACTCGGCGGTTCAGACGGAGACCTCGGCGGAGCGGACGGCGGTGAAGCGGCCGCGGCTGGTGTGGACCCCACAGCTTCACAAGAGGTTCGTTGACGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAATTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTCGCAAGCCATCTCCAGAAGTATCGTCTCTACCTGAAACGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTGCTTCGGATCAGTTATTTGCGTCGACACCTGTGCCTCAGAGCTTGCATGACTCTGCTCCTCCCAGTAACCATAGCAATGGTCATGGTCATGGGCATGGCCATAGCAATGGCCGTGGTCATGGTCATGGTCATGGTCATGGTCATCTCTCTGTTCCGATGATGTCCATGCCATATCCACCTCCCCTGATGTCCATGCCATATCCACCTCCCATGATGTCGGGCATGCCCCATGGCCACATGGGCATCCCCATGCCTAATTCCTCCGCCACCTCAGCTTACCATCCTTATAATATGTTGCATCAAAGGGATTGGCCTCACCTTGCTCCTAATGATAAATGA

Predicted protein sequences of Glyma.11g136600

Limit To All Plant Sequences

>Glyma.11g136600.1.p sequence-type=predicted peptide transcript=Glyma.11g136600.1 locus=Glyma.11g136600 ID=Glyma.11g136600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGEEVKTSEYDEERVMEWEAGLPTANDLTPLSQPLIPPELASAFSILPEPHRTLLDVNRASRNTLSTLRGGGGSVHQAFSSSNNNHNYDGDGDGGVEEEEDDDDDRDGSGPDSRKQRKIDCGAAEEADSAVQTETSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSASDQLFASTPVPQSLHDSAPPSNHSNGHGHGHGHSNGRGHGHGHGHGHLSVPMMSMPYPPPLMSMPYPPPMMSGMPHGHMGIPMPNSSATSAYHPYNMLHQRDWPHLAPNDK*

>Glyma.11g136600.2.p sequence-type=predicted peptide transcript=Glyma.11g136600.2 locus=Glyma.11g136600 ID=Glyma.11g136600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGEEVKTSEYDEERVMEWEAGLPTANDLTPLSQPLIPPELASAFSILPEPHRTLLDVNRASRNTLSTLRGGGGSVHQAFSSSNNNHNYDGDGDGGVEEEEDDDDDRDGSGPDSRKQRKIDCGAAEEADSAVQTETSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSASDQLFASTPVPQSLHDSAPPSNHSNGHGHGHGHSNGRGHGHGHGHGHLSVPMMSMPYPPPLMSMPYPPPMMSGMPHGHMGIPMPNSSATSAYHPYNMLHQRDWPHLAPNDK*

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