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Report for Sequence Feature Glyma.11g133400

Feature Type:gene_model
Chromosome:Gm11
Start:10197966
stop:10204411
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g133400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12080.1AT GTP-binding family protein JGI N/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0015684GO-bp ferrous iron transport JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0015093GO-mf ferrous iron transmembrane transporter activity JGI N/AIEA
KOG1191 KOG Mitochondrial GTPase JGI N/AIEA
PTHR11649Panther MSS1/TRME-RELATED GTP-BINDING PROTEIN JGI N/AIEA
PTHR11649:SF5Panther GTP-BINDING PROTEIN JGI N/AIEA
PF01926PFAM 50S ribosome-binding GTPase JGI N/AIEA

Expression Patterns of Glyma.11g133400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g133400 not represented in the dataset
Glyma.11g133400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g133400
ParalogEvidenceComments
Glyma.12g057600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g133400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g14171 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g133400
>Glyma.11g133400.1 sequence-type=CDS polypeptide=Glyma.11g133400.1.p locus=Glyma.11g133400 ID=Glyma.11g133400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGCTCACTCGCCGCACCCTATCCTGTTCCGTCCTCCGTCCTACCGCCGGTGAATTCTCCGGCAGCGTCGATGATGAAGAATCCGATGATTTGGACGACCTCGATGTCGTTGCCCTCGAGCAAGAAGCGAAGGACGCTGTCCAAGCGTATTCAAGCTCTCTGTCTCAGATTTTGAGCATTGAAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCCCGCAGGAAGAGTCCACGTAGAACAAAAATTGTTTGTATGACATTCAGTTTACTTTTGTTATTACGGGTTGCAATTGTTGGAAGGCCAAATGTTGGCAAATCAGCATTATATAATCGTCTTGTTGGGGGAAACAGGGCAATTGTGGTGGATGAACCTGGGGTTACCAGGGATCGTTTATACGGTCGATCGTATTGGGGAGAGCATGAATTCATGGTAGTGGACACCGGTGGGGTTATAACCGTTTCAAAATCACAAGCTACTGTTATGGAAGAGCTGGCTATTACTACTACCATTGGTATGGATGGCATTCCACTTGCTGTTAGAGAGGCAGCTGTTGCCTGGATGCCCTCAATGATTGAGAGACAAGCAACTGCAGCTGTGGAAGAATCATCTGTGATTATTTTCCTGGTTGATGGTCAGGCAGGTCTAACAGCAGCTGATGAGGAGATTGCTGATTGGCTACGTAAAAAATACTCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGCAAAAGAATTATGCAGGCGTCTGAATTTTGGTCCCTTGGTTACAGAACTGTTATCTGCAAACTTGATCTTGTTCTTCACCTTATCATCAATGTTTACAAACCACTCTCTATGTCCGATCATAAATCTAATAATCTTGTTGAAGAAGAGGATTATGTTCCGGCAATTTCAATTGTTGGTAGACCAAATGTTGGCAAAAGTAGCATTTTGAATGCACTTGTTGGTGAGGACAGAACAATAGTCAGTCCCATCAGTTGCACTACCCGTGATGCTATTGATACTGAATTTACTGGACCAGATGGACAGAAGTTCCAACTTATTGATACTGCTGGAATCAGGAAAAGATCAGCGATTGCTTCAGCTGGGACATTTTGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATCGAGGCCATGGCTTGTATCACAGAACAGGAATACAACATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCATCATACTATGAGCAAGATGTCAGGGAGAAGCTTCGCTCACTTGACTGGGCTCCAATAGTTTATTCTACTGTTGTAGCTGGTCATAGTGTTGGCAAGATTATTGTGGCTGCTAGTGAAGTTGAAAAGGAGAGATCAAGAAGACTTGGGACTTCTACATTGAATCAAGTAGTTCAGGAAGCAGTAGGTTTTAAGCCTCCTCCCAGGACACGTGGTGGAAAAGGAGGGCGTGTTTACTATTGTACTCAGGCTGCTATAAAGCCACCTACATTTGTGTTCTTTGTCAATGATGGAAAACTTTTTCCTGAGACTTACCGGCGCTATATGGAGAAGCAACATCGTTCAGATGCAGGTTTTTTTGGTACACCCATTCGACTTCTCTGGCGCAGCAGAAGGAAAGTGGGAAATGATGAAAGTCGGTATTTGTAG
Predicted protein sequences of Glyma.11g133400
>Glyma.11g133400.1.p sequence-type=predicted peptide transcript=Glyma.11g133400.1 locus=Glyma.11g133400 ID=Glyma.11g133400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
KLTRRTLSCSVLRPTAGEFSGSVDDEESDDLDDLDVVALEQEAKDAVQAYSSSLSQILSIEDEEKSDRKESAQSRRKSPRRTKIVCMTFSLLLLLRVAIVGRPNVGKSALYNRLVGGNRAIVVDEPGVTRDRLYGRSYWGEHEFMVVDTGGVITVSKSQATVMEELAITTTIGMDGIPLAVREAAVAWMPSMIERQATAAVEESSVIIFLVDGQAGLTAADEEIADWLRKKYSDKYVILAVNKCESPRKRIMQASEFWSLGYRTVICKLDLVLHLIINVYKPLSMSDHKSNNLVEEEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISCTTRDAIDTEFTGPDGQKFQLIDTAGIRKRSAIASAGTFCAIRRSDVVALVIEAMACITEQEYNIAERIEKEGKGCVIVVNKWDTIPNKNQQTASYYEQDVREKLRSLDWAPIVYSTVVAGHSVGKIIVAASEVEKERSRRLGTSTLNQVVQEAVGFKPPPRTRGGKGGRVYYCTQAAIKPPTFVFFVNDGKLFPETYRRYMEKQHRSDAGFFGTPIRLLWRSRRKVGNDESRYL*






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