Glyma.11g130000

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.11g130000

Feature Type:	gene_model
Chromosome:	Gm11
Start:	9895179
stop:	9897816
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g130000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25630.1	AT	beta glucosidase 14	JGI	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	EnsemblGenomes	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	JGI	N/A	IEA
GO:0009651	GO-bp	response to salt stress	EnsemblGenomes	N/A	IEA
GO:0009725	GO-bp	response to hormone	EnsemblGenomes	N/A	IEA
GO:0019762	GO-bp	glucosinolate catabolic process	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	JGI	N/A	IEA
GO:0008422	GO-mf	beta-glucosidase activity	EnsemblGenomes	N/A	IEA
PTHR10353	Panther	GLYCOSYL HYDROLASE	JGI	N/A	IEA
PF00232	PFAM	Glycosyl hydrolase family 1	JGI	N/A	IEA
GN7V-55496	SoyCyc9-rxn	β-glucosidase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.11g130000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g130000 not represented in the dataset	Glyma.11g130000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g130000

Paralog	Evidence	Comments
Glyma.12g054400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g130000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g13856	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g130000

Limit To All Plant Sequences

>Glyma.11g130000.2 sequence-type=transcript locus=Glyma.11g130000 ID=Glyma.11g130000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
gagggagcacatacgacaagcaggatttgatgctgatttcctaatttctctctcaagcgtagtccttcagCCATTACCATTACTCGTTCCAACACCAATGCACTCATTCATGAGGTTTCTTATCTCAACCGGAGCAGTTTCCCGCTAGGCTTTATTTTCGGGACAGCATCCTCAGCATATCAGTATGAAGGTGCTGCAAGTGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAAATAAAAGAGGGAAGTAATGGAGAAGTAGCGGACGACTCATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTATATGAATTTGGATGCTTATAGATTTTCCATTTCATGGTCTAAGATACTACCGAGTGTAAACCATGAAGGAGTAAACTACTACAACAACCTCATCAATGAGCTCATGGCTAATGGTCTGCAACCATATGTGCAATCATATGTGACATTTTTCCATTGGGACGTCCCCCAAGCCTTAGAGGATGAAGATGATTTTAGGGACAGTGCTGAATTTTGCTTGAAGGAATTTGACAATAGGGTGAAACATTGGATTACTTTGAATGAACCGAGGAGTGCGAGCAAGAATGGCTATGCAAATGGCAGGCATCTCAAAAGGGTTTAATAGGGATTACCTTGAATTCTGATTGGTATGTTCTGGTTTCTAAAGAGAAAATTGATCGAGATGCTGCACGTCGGAGCCTCGACTTCATGTTTGGATGACAAGTTTATACTCAACATTCATAGTTTGGAGGGAAGGAAAATTGACAGACAATTTTTTTTTTTTTTTGAAAATATAATCATGTGGTGACTGATAGTATACTACATTTAGTAAGAAAAATGTGAGCCAACAACATTATTGATTGCTATTAGTTGACGATGCACTTAGATTGATGTGTTGGTACCTGATCTTT

Coding sequences of Glyma.11g130000

Limit To All Plant Sequences

>Glyma.11g130000.1 sequence-type=CDS polypeptide=Glyma.11g130000.1.p locus=Glyma.11g130000 ID=Glyma.11g130000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGTGCTGCAAGTGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAAATAAAAGAGGGAAGTAATGGAGAAGTAGCGGACGACTCATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTATATGAATTTGGATGCTTATAGATTTTCCATTTCATGGTCTAAGATACTACCGAGTGTAAACCATGAAGGAGTAAACTACTACAACAACCTCATCAATGAGCTCATGGCTAATGGTCTGCAACCATATGTGCAATCATATGTGACATTTTTCCATTGGGACGTCCCCCAAGCCTTAGAGGATGAAGATGATTTTAGGGACAGTGCTGAATTTTGCTTGAAGGAATTTGACAATAGGGTGAAACATTGGATTACTTTGAATGAACCGAGGAGTGCGAGCAAGAATGGCTATGCAAATGGCAGGTTTGCGCTTGGTTGGTTAAAAATGAATTGCAAAGTTGGTGATTTGGGAACTGAGCCATATTTGAGTTCGCATTACCAACTTGTTTTCATTACTATCAGGTCCTCGGTGCTCTTGAGCTGCTTTAATTTAAAATCACCAAATGTTTTTTAA

>Glyma.11g130000.2 sequence-type=CDS polypeptide=Glyma.11g130000.2.p locus=Glyma.11g130000 ID=Glyma.11g130000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGTGCTGCAAGTGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAAATAAAAGAGGGAAGTAATGGAGAAGTAGCGGACGACTCATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTATATGAATTTGGATGCTTATAGATTTTCCATTTCATGGTCTAAGATACTACCGAGTGTAAACCATGAAGGAGTAAACTACTACAACAACCTCATCAATGAGCTCATGGCTAATGGTCTGCAACCATATGTGCAATCATATGTGACATTTTTCCATTGGGACGTCCCCCAAGCCTTAGAGGATGAAGATGATTTTAGGGACAGTGCTGAATTTTGCTTGAAGGAATTTGACAATAGGGTGAAACATTGGATTACTTTGAATGAACCGAGGAGTGCGAGCAAGAATGGCTATGCAAATGGCAGGCATCTCAAAAGGGTTTAA

Predicted protein sequences of Glyma.11g130000

Limit To All Plant Sequences

>Glyma.11g130000.1.p sequence-type=predicted peptide transcript=Glyma.11g130000.1 locus=Glyma.11g130000 ID=Glyma.11g130000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKVLQVKVEKDRVYGILSLINTQKKIKEGSNGEVADDSYHRYKEDIGIMKYMNLDAYRFSISWSKILPSVNHEGVNYYNNLINELMANGLQPYVQSYVTFFHWDVPQALEDEDDFRDSAEFCLKEFDNRVKHWITLNEPRSASKNGYANGRFALGWLKMNCKVGDLGTEPYLSSHYQLVFITIRSSVLLSCFNLKSPNVF*

>Glyma.11g130000.2.p sequence-type=predicted peptide transcript=Glyma.11g130000.2 locus=Glyma.11g130000 ID=Glyma.11g130000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKVLQVKVEKDRVYGILSLINTQKKIKEGSNGEVADDSYHRYKEDIGIMKYMNLDAYRFSISWSKILPSVNHEGVNYYNNLINELMANGLQPYVQSYVTFFHWDVPQALEDEDDFRDSAEFCLKEFDNRVKHWITLNEPRSASKNGYANGRHLKRV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain