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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06720.1 | AT | P-loop containing nucleoside triphosphate hydrolases superfamily protein | JGI | N/A | IEA |
| GO:0000462 | GO-bp | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0000479 | GO-bp | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0042254 | GO-bp | ribosome biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0042254 | GO-bp | ribosome biogenesis | JGI | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0030686 | GO-cc | 90S preribosome | EnsemblGenomes | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | EnsemblGenomes | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | JGI | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | EnsemblGenomes | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | JGI | N/A | IEA |
| GO:0034511 | GO-mf | U3 snoRNA binding | EnsemblGenomes | N/A | IEA |
| KOG1980 | KOG | Uncharacterized conserved protein | JGI | N/A | IEA |
| PTHR12858 | Panther | RIBOSOME BIOGENESIS PROTEIN | JGI | N/A | IEA |
| PTHR12858:SF2 | Panther | RIBOSOME BIOGENESIS PROTEIN BMS1 HOMOLOG | JGI | N/A | IEA |
| PF00009 | PFAM | Elongation factor Tu GTP binding domain | JGI | N/A | IEA |
| PF04950 | PFAM | Protein of unknown function (DUF663) | JGI | N/A | IEA |
| PF08142 | PFAM | AARP2CN (NUC121) domain | JGI | N/A | IEA |
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Glyma.11g125100 not represented in the dataset |
Glyma.11g125100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g049700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g13340 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g125100.1 sequence-type=CDS polypeptide=Glyma.11g125100.1.p locus=Glyma.11g125100 ID=Glyma.11g125100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCGTCAACGACGCCGATCAATCCAATAAGTCTCACAGGACTCGTCAATCTGGTGCCAAAACCAACAAGAAGAAGAAGACTAAGAAGAAGCAAAAGCAGAATCCCGATGACGCCGGAGGATTAGAGGATCCTAAGAACCGAAACCCTAAGGCATTCGCTTTCACTTCCTCCAACAAAGCCAAGCGCTTGCAATCACGCGCCGTCGAGAAAGAGCAGCGCCGCCTCCACGTTCCCGTCATCGACCGCTCCTACGACGAACCCGCTCCCTACGTCGTCGTTGTGCAGGGCCCTCCTCAGGTTGGGAAGTCACTGTTGATTAAGTCTTTGGTTAAACATTACACGAAACATAATTTGCCTGATGTGAGAGGTCCAATTACCATCGTATCAGGGAAGCAAAGGCGGGTGCAGTTTGTGGAATGTCCGAATGATATCAATGGCATGATAGATGCCGCGAAGTTTGCCGATCTAGCACTTCTTCTTATAGATGGAAGTTATGGTTTCGAAATGGAAACCTTTGAGTTCCTTAACATATTGCAAGTTCATGGGTTCCCTAAGGTCATGGGGGTTCTCACCCACCTTGATAAATTCAAGGATGCGAAGAAGTTGAGGAAAACAAAACAGCGACTCAAGCACCGGTTCTGGACTGAAATATATGATGGCGCTAAACTGTTTTACTTATCGGGCCTTATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTTGCTCGATTTATATCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCTCACCCCTATGTTATGGTAGATCGTTTTGAAGACATCACTCCTCCTGAAAAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACTCTTTATGGCTATCTTAGAGGCTGCAATTTGAAAATGGGCAATAAGGTGCACATAGCAGGAGTGGGTGATTATAGTTTAGCTGTTGTTACTGCTTTACCTGATCCTTGTCCTCTTCCATCTGCCGCAAAAAAGAAAGGACTGCGTGATAAGGAAAAGTTATTCTATGCTCCCATGTCTGGCCTTGGGGATCTTTTGTACGACAAAGATGCTGTATACATAAATATTAATGATCACCTTGTTCAATTCTCAAAAGTTGATGAAAACTCTGCTATGACGAGTAAAGGAAAGGGTGGAGATATTGGGGAGGATTTGGTGAAATCGCTACAGAATATCAAATACTCAATTAATGAAAAACTAGAGAACAGCTTTATCAATATTTTTGGTCAAAAGACAAATGTGTCATCAGAAGCTCTAGGTGATGCACATGGCACAAACAAGGAAGTTGAACCAAATGGCAAAACAGAAGCTTTGGATAAATATCAGCCTGGGGCTGTTATAACTGGTGAAGATAATAACAAAATGGATTTGGATGGTTCAGAATCATCTGATCAGGATGAAGATGATGCCACAGACAGAGAACCCTCTGGTTCTGATGATGATGACAAAGATGCACCAAATAGTAATGCTAGTAATGGAGTCCATTTGCAAGAACATATTGAGTTTCATGATGGAAGACAGAGGAGAAGAGCAATATTTGGAAATGATGTTGATCAAAATGATCTGATGGATTCAGAAGGGGATGATGATGGTGATACCAGTGATGATGATGTAGAATCTTCAGAAGAGGAGGAGGAAGATGACAATGATAATGATGACACAAATGAAGATAACATGGGTAATGTTTCCAAATGGAAAGAGTCTTTGGCAGAAAGAAATCTCTCACGGAAAACTCCTAGTTTGATGCAACTTGTGTACGGGGAATCTACAATTAATTCCACCACTATAAACAGAGATAATGATAATAGTGGGGATGAGGAAAGTGATGATGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAACGTGAGAGATGGATTGAATGACGATGGGATGGTCAACACTGAGGATTGTTCCAAGTGTACACAATTTGTGGATCAGAGATGGGATGAGAATGATAATGAGGAGATTCGCAATCGATTTGTGACTGGCAATTTGGCAAAAGCTGCACTTAGAAATGCATTACCAGCAGCTAATACTGAAGAGGAAAATGATGATGTCTATGGTGACTTTGAAGATTTGGAAACAGGAGAAAAGCATGAGAATCATCAGACGGATGATGCTTTGGCTGCAACAACACACAAGGGAGATGATTTAGAAGCTGAGGAGCGGAGGCTTAAGAAACTTGCTCTTCGTGCTAAGTTTGACTCTCAATTTGATGATGACTCTGGGTCATCAGAGGAAGATACTGGTAATGAAAATGAAGACAAGTTCCGTCGTGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAAGAGGAGATTGAACTCCAGAAACAAATGAATATAGCTGAACTCAACGATCTTGATGAGGCTACCCGATTGGAGATAGAAGGCTTCCGAACAGGAACTTATCTAAGATTGGAGATTCATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGATTGGTATAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGACCCAATTATTGTATCTGTTGGATGGAGGCGTTACCAGACAACCCCAATTTATGCCATTGAGGATAGTAATGGAAGGGATCGTATGCTAAAATATACTCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCCTTTCAGAACTTATCAAACAATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACCTCAGATCTTGAAGTAGCTCGTTTTGAAGGTGCAGCTATTCGGACAGTCAGTGGGATTAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGAGATAGGTAATCAAGCGAAAAGGAAGGGTGGGCAAACCAAAGAAGGAATTGCTAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATAGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACAGCATTGCAGCCTCGTGACATGACCTGGAAAGGAATGAAAACTGTTGCAGAATTGAGAAGAGAGCATAATCTTGCTATTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGAAAATTCAATCCAGTGGTGATTCCCAAGTCTCTACAAGCGAGTCTACCCTTTGCATCAAAACCGAAGGATATTTCCAAGCGAAAAAAGCCGTTACTTGAGGAGAGAAGGGCAAGGGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATACTCTTGTTCAACACCTCCAGTTAATAGATAGGGAGAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAATAAGAGGAAAGCACTTGAAGCAGAGAGTGCAAAAGAAGAGCTGTTGTTGAGAAAGCGCCGGAGAGAGGAGAGAAGAGACAAATACCGGAAGGAAGACAAGCAGAATAAGAAAATTCGGAGAGCAGAGGTTTGA
>Glyma.11g125100.1.p sequence-type=predicted peptide transcript=Glyma.11g125100.1 locus=Glyma.11g125100 ID=Glyma.11g125100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAVNDADQSNKSHRTRQSGAKTNKKKKTKKKQKQNPDDAGGLEDPKNRNPKAFAFTSSNKAKRLQSRAVEKEQRRLHVPVIDRSYDEPAPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVMVDRFEDITPPEKVHANNKCDRKVTLYGYLRGCNLKMGNKVHIAGVGDYSLAVVTALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDENSAMTSKGKGGDIGEDLVKSLQNIKYSINEKLENSFINIFGQKTNVSSEALGDAHGTNKEVEPNGKTEALDKYQPGAVITGEDNNKMDLDGSESSDQDEDDATDREPSGSDDDDKDAPNSNASNGVHLQEHIEFHDGRQRRRAIFGNDVDQNDLMDSEGDDDGDTSDDDVESSEEEEEDDNDNDDTNEDNMGNVSKWKESLAERNLSRKTPSLMQLVYGESTINSTTINRDNDNSGDEESDDDFFKPIEEVKKQNVRDGLNDDGMVNTEDCSKCTQFVDQRWDENDNEEIRNRFVTGNLAKAALRNALPAANTEEENDDVYGDFEDLETGEKHENHQTDDALAATTHKGDDLEAEERRLKKLALRAKFDSQFDDDSGSSEEDTGNENEDKFRRGQANESSYFDKLKEEIELQKQMNIAELNDLDEATRLEIEGFRTGTYLRLEIHDVPCEMVEYFDPYHPILVGGIGIGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPIYAIEDSNGRDRMLKYTPEHMHCLAMFWGPLAPPNTGVVAFQNLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQAKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDMTWKGMKTVAELRREHNLAIPVNKDSLYKKIERKPRKFNPVVIPKSLQASLPFASKPKDISKRKKPLLEERRARGVVMEPRERKVHTLVQHLQLIDREKMKKRKLKEENKRKALEAESAKEELLLRKRRREERRDKYRKEDKQNKKIRRAEV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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