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Report for Sequence Feature Glyma.11g121700

Feature Type:gene_model
Chromosome:Gm11
Start:9299271
stop:9300774
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g121700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16060.1AT hemoglobin 1 JGI N/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0015671GO-bp oxygen transport EnsemblGenomesN/AIEA
GO:0005344GO-mf oxygen carrier activity EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0019825GO-mf oxygen binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PTHR22924Panther LEGHEMOGLOBIN-RELATED JGI N/AIEA
PTHR22924:SF4Panther JGI N/AIEA
PF00042PFAM Globin JGI N/AIEA

Proteins Associated with Glyma.11g121700
LocusGene SymbolProtein Name
HB2 Non-symbiotic hemoglobin 1-like gene

Expression Patterns of Glyma.11g121700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g121700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g12960 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.11g121700
>Glyma.11g121700.2 sequence-type=transcript locus=Glyma.11g121700 ID=Glyma.11g121700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAATCAAAGAACGTGGCAACCAAAAGCATGGGAATGCCTTCCCATTACATTGAAGGGGCAACCTCATCTTGAAGGGGAAATATCTCACTACAAAACCAAGCTACAACATCAACCACTGCCATCATATGACAATCATATATACCAATACTAGCTAGTAGCTAGAGAGTAGAGAACATGGAGGGCAAAGGTTTCACGGAAGAGCAAGAAGCTCTGGTGGTGAAATCATGGAACGAAATGAAGAAGAATTCTCAAGAACTCGGTCTTAAATTTTTCAAGAAAATATTGGAGATTGCTCCAGCAGCTCAGCAATTGTTCTCATTCTTGAAGGATTCAACTGTTCCTTTGGAGGAAAACCCCAAGCTCAAGCCCCATGCCATGGCTGTCTTTGTCATGGTAACAAAGTTGGCACTATTGGAGACCATAAAAGAAGCAGTGCCTGAAATGTGGTCACCAGCCATGAAGAATGCATGGGAAGAAGCTCATGATCAGCTGGCCGAAGCCATCAAATCTGAAATGAAGCCCTCTGATTAGACTCTAGTAGTTGCTTTCTCTCAAATTGAATAAGATTGATAGGGTGGTGGTGTTTGGGTCTGTGCTTCTCGTTTGTATGAATTTTAATAATGTATCTATGTTGCTATTGGGGTTGCTATGTCGGAAAGTGTTCACATTTTAACAATTCAGTTATTGAAGGTGATGTGAATTGTAAGGAAAGGGAAAATGATAAATGCATGGATGGTATGAATTGTTACAATTTT
Coding sequences of Glyma.11g121700
>Glyma.11g121700.1 sequence-type=CDS polypeptide=Glyma.11g121700.1.p locus=Glyma.11g121700 ID=Glyma.11g121700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGCAAAGGTTTCACGGAAGAGCAAGAAGCTCTGGTGGTGAAATCATGGAACGAAATGAAGAAGAATTCTCAAGAACTCGGTCTTAAATTTTTCAAGAAAATATTGGAGATTGCTCCAGCAGCTCAGCAATTGTTCTCATTCTTGAAGGATTCAACTGTTCCTTTGGAGGAAAACCCCAAGCTCAAGCCCCATGCCATGGCTGTCTTTGTCATGACGTGTGAATCAGCTGTTCAACTGAGGAAAGCTGGTAAAGTCACTGTGAGGGAATCAAACTTGAAAAGATTAGGTGCTACTCATTTTAAAGCCGGTGTAGCAGCTGAGCATTTCGAGGTAACAAAGTTGGCACTATTGGAGACCATAAAAGAAGCAGTGCCTGAAATGTGGTCACCAGCCATGAAGAATGCATGGGAAGAAGCTCATGATCAGCTGGCCGAAGCCATCAAATCTGAAATGAAGCCCTCTGATTAG

>Glyma.11g121700.2 sequence-type=CDS polypeptide=Glyma.11g121700.2.p locus=Glyma.11g121700 ID=Glyma.11g121700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGCAAAGGTTTCACGGAAGAGCAAGAAGCTCTGGTGGTGAAATCATGGAACGAAATGAAGAAGAATTCTCAAGAACTCGGTCTTAAATTTTTCAAGAAAATATTGGAGATTGCTCCAGCAGCTCAGCAATTGTTCTCATTCTTGAAGGATTCAACTGTTCCTTTGGAGGAAAACCCCAAGCTCAAGCCCCATGCCATGGCTGTCTTTGTCATGGTAACAAAGTTGGCACTATTGGAGACCATAAAAGAAGCAGTGCCTGAAATGTGGTCACCAGCCATGAAGAATGCATGGGAAGAAGCTCATGATCAGCTGGCCGAAGCCATCAAATCTGAAATGAAGCCCTCTGATTAG
Predicted protein sequences of Glyma.11g121700
>Glyma.11g121700.1.p sequence-type=predicted peptide transcript=Glyma.11g121700.1 locus=Glyma.11g121700 ID=Glyma.11g121700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGKGFTEEQEALVVKSWNEMKKNSQELGLKFFKKILEIAPAAQQLFSFLKDSTVPLEENPKLKPHAMAVFVMTCESAVQLRKAGKVTVRESNLKRLGATHFKAGVAAEHFEVTKLALLETIKEAVPEMWSPAMKNAWEEAHDQLAEAIKSEMKPSD*

>Glyma.11g121700.2.p sequence-type=predicted peptide transcript=Glyma.11g121700.2 locus=Glyma.11g121700 ID=Glyma.11g121700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGKGFTEEQEALVVKSWNEMKKNSQELGLKFFKKILEIAPAAQQLFSFLKDSTVPLEENPKLKPHAMAVFVMVTKLALLETIKEAVPEMWSPAMKNAWEEAHDQLAEAIKSEMKPSD*






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