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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G68920.3 | AT | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | JGI | N/A | IEA |
AT4G34530.1 | AT | cryptochrome-interacting basic-helix-loop-helix 1 | JGI | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
GO:0046983 | GO-mf | protein dimerization activity | EnsemblGenomes | N/A | IEA |
GO:0046983 | GO-mf | protein dimerization activity | JGI | N/A | IEA |
PTHR12565 | Panther | STEROL REGULATORY ELEMENT-BINDING PROTEIN | JGI | N/A | IEA |
PTHR12565:SF7 | Panther | JGI | N/A | IEA | |
PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | N/A | IEA |
Locus | Gene Symbol | Protein Name |
---|---|---|
CIB1 | basic helix-loop-helix transcription activator CIB1 |
Glyma.11g117100 not represented in the dataset |
Glyma.11g117100 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.12g042800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma11g12450 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g117100.2 sequence-type=transcript locus=Glyma.11g117100 ID=Glyma.11g117100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ACGAAACAAATATAATATAATCTTCCCACGTTTATATATACCCACTCCTATCCCTCTCCTCATCCTTAACAACATTTCACGCTTCCTCCTCCTCTGTTTCTCTCGCACACTCTGACCCTACGTCGTTTTTTCTTTTTGTTTTCCAAACACACACACACCGCGTACTACAACTACAACAACGCCGTGCCTAATCCTTAAGAATAACAAACAACAGCCAACCATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGtcttctcttcttcttcttcttcttctCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAAACCAGATCGATCATCCATTATAATTTGTTGGTGGATTAGGTCACTCGGAGTGCCTTTGTCATGATTTTTTCTTTTTTCTTTTTTCGAGTACATAACATATATTGGTTGTATACTGCTCCGTAGAATAAATAAGATCATATTAATACCTGTTAACTTCAATCACCTGCATTTGCACGTTTAAAGTACTatatagatgataataaaaagaaaaataaaataaaaatgaaaaGGTT >Glyma.11g117100.3 sequence-type=transcript locus=Glyma.11g117100 ID=Glyma.11g117100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ACGAAACAAATATAATATAATCTTCCCACGTTTATATATACCCACTCCTATCCCTCTCCTCATCCTTAACAACATTTCACGCTTCCTCCTCCTCTGTTTCTCTCGCACACTCTGACCCTACGTCGTTTTTTCTTTTTGTTTTCCAAACACACACACACCGCGTACTACAACTACAACAACGCCGTGCCTAATCCTTAAGAATAACAAACAACAGCCAACCATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGtcttctcttcttcttcttcttcttctCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTGTAGGTTTTTTTACCCTCTCTTGTGTATGTAATGTTCTTCTAATGATTAGTCTTGTCCAAATATTGATCTGAATTTTTTTGCACTGCAGCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAAACCAGATCGATCATCCATTATAATTTGTTGGTGGATTAGGTCACTCGGAGTGCCTTTGTCATGATTTTTTCTTTTTTCTTTTTTCGAGTACATAACATATATTGGTTGTATACTGCTCCGTAGAATAAATAAGATCATATTAATACCTGTTAACTTCAATCACCTGCATTTGCACGTTTAAAGTACTatatagatgataataaaaagaaaaataaaataaaaatgaaaaGGTT
>Glyma.11g117100.1 sequence-type=CDS polypeptide=Glyma.11g117100.1.p locus=Glyma.11g117100 ID=Glyma.11g117100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTAGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAA >Glyma.11g117100.2 sequence-type=CDS polypeptide=Glyma.11g117100.2.p locus=Glyma.11g117100 ID=Glyma.11g117100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAA >Glyma.11g117100.3 sequence-type=CDS polypeptide=Glyma.11g117100.3.p locus=Glyma.11g117100 ID=Glyma.11g117100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTGTAGGTTTTTTTACCCTCTCTTGTGTATGTAATGTTCTTCTAATGATTAGTCTTGTCCAAATATTGATCTGA
>Glyma.11g117100.1.p sequence-type=predicted peptide transcript=Glyma.11g117100.1 locus=Glyma.11g117100 ID=Glyma.11g117100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLHCLNTSGNLGATCSDMTVLERQREATIKWQQHLQNNQPPYLTDFNVNVNAVFSSSSSSSQSQGLVMNICADSALGEVLTHSVKPDPGVWPEFDAGFGSSSGFLPTISPTCSRGGDLVSPKENMASAKENTKKRKPQNSKVVVAASDNKQDKRVKASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLDELFTKEVFPSCAQSFPNIGMPLDMSMSNNPSYLPFNSAQQLVSCCGGLINNMGISPPNMGLRRNISTSPVPLPETFLDSSCFTQILPSSNWEGGDFQSLYNVAFDQGRTASFPSQPFTGLVEASNLKMEM* >Glyma.11g117100.2.p sequence-type=predicted peptide transcript=Glyma.11g117100.2 locus=Glyma.11g117100 ID=Glyma.11g117100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLHCLNTSGNLGATCSDMTVLERQREATIKWQQHLQNNQPPYLTDFNVNVNAVFSSSSSSSQSQGLVMNICADSALGEVLTHSVKPDPGVWPEFDAGFGSSSGFLPTISPTCSRGGDLVSPKENMASAKENTKKRKPQNSKVVAASDNKQDKRVKASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLDELFTKEVFPSCAQSFPNIGMPLDMSMSNNPSYLPFNSAQQLVSCCGGLINNMGISPPNMGLRRNISTSPVPLPETFLDSSCFTQILPSSNWEGGDFQSLYNVAFDQGRTASFPSQPFTGLVEASNLKMEM* >Glyma.11g117100.3.p sequence-type=predicted peptide transcript=Glyma.11g117100.3 locus=Glyma.11g117100 ID=Glyma.11g117100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLHCLNTSGNLGATCSDMTVLERQREATIKWQQHLQNNQPPYLTDFNVNVNAVFSSSSSSSQSQGLVMNICADSALGEVLTHSVKPDPGVWPEFDAGFGSSSGFLPTISPTCSRGGDLVSPKENMASAKENTKKRKPQNSKVVAASDNKQDKRVKASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLDELFTKEVFPSCAQSFPNIGMPLDMSMSNNPSYLPFNSAQQLVSCCGGLINNMGISPPNMGLRRNISTSPVPLPETFLDSSCFTVGFFTLSCVCNVLLMISLVQILI*
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