SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02955.1 | AT | maternal effect embryo arrest 12 | JGI | N/A | IEA |
| GO:0001188 | GO-bp | RNA polymerase I transcriptional preinitiation complex assembly | EnsemblGenomes | N/A | IEA |
| GO:0006360 | GO-bp | transcription by RNA polymerase I | EnsemblGenomes | N/A | IEA |
| GO:0005668 | GO-cc | RNA polymerase transcription factor SL1 complex | EnsemblGenomes | N/A | IEA |
| GO:0070860 | GO-cc | RNA polymerase I core factor complex | EnsemblGenomes | N/A | IEA |
| GO:0001164 | GO-mf | RNA polymerase I CORE element sequence-specific DNA binding | EnsemblGenomes | N/A | IEA |
| PTHR22937 | Panther | RING FINGER CONTAINING PROTEIN | JGI | N/A | IEA |
| PTHR22937:SF25 | Panther | JGI | N/A | IEA |
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Glyma.11g111300 not represented in the dataset |
Glyma.11g111300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g11890 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g111300.1 sequence-type=CDS polypeptide=Glyma.11g111300.1.p locus=Glyma.11g111300 ID=Glyma.11g111300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTGATGTCCATAAGTTGATTTGCCAAACCTGTAACAACGTGGGTGTTGGTGATGGTTCTGATGGCTTTTTCTACTGCCTTCGCTGTGGTTCTCAATGCGAGGATGTGATGGACACCGCTGTTGATGACGATGATCTCTTCAACAAGAGTGCTGTCTACTTGCCTAGTCACCAACGCCAGCGATCTGTTGCAATCAAAGCCGAGCCCATCTCTCAGTATGACTCCTTTTACGATTCCCACTCCAATTTCATTAGGAATCTGGGTTTAGAAGATGAAAATCCTCAACGAAATGATCATGTTCAAGTTAAAAGAGAGGAGGAATTTGACGCTGCCCAGTTTGATGAGGCAAGTCCTTCTGTTCCTGCTGATTTTGGTGGCTCCCAAGTTGCATGCTTTGAAGACTACCACAATGAGATAAGGATGCGGTATGTGATGGGGTTGCAGATGATGATTGAGCTTCAGTGTGAAGCGCTGGTGAAGGAGTTTAAGGTGACCCCTTTAATTTGTGGCTTGGTTGGCCCAATTTGGTTGAGGTTTGTCTCCAAGACTGGCATTTTCGGTGATGACTGGGCTGATAAAGTAATCCATGACTCTGAAACGCAGAATGAAGATGAACCAGAAGATTACAAGTTACGTGCTAAATACAGAACAGAGCCCCACAATATGTTTGGCAAGCGAGCTGTCATGATATGGTTTAGGTCTTTAAAGAAAAGGATTCCACTACCTTGTACTGTTGCTGTTTCATTTCTGGCATGTCATGTAGCCAGGGAAGCTGTCCTGCCATCTGACATGATGAAGTGGACACTTGAAGGGAAGCTTCCATATTTTTCTGCTTTTGTTGAAATTGAAAAGCGCATGGGACAACCAACAAGTGCATGTCCTATTAGTTCAAGTGTTATGTTCAGGCCCCAACAAGCTATTCCAGTACAGAAGCTAGAGTCATTTGCTGCATCCATTGCTCAGTTCATAGGCTTGGAGTTACCTCCCGTGAACTTTTATGCTATAGCTTATCTTTTTCTTCAAAAGTTATCACTGCCTGTTGAAAAGATTCTTCCTTATGCATGCCGCATATATGAATGGTCGATGCCTCCTGATTTGTGGTTATCCTTATCCAGTAATTATTTTAGGCTACCTACTCATGTATGCGTTATGTCAATTCTGGTAGTAGCAATAAGGATATTGTATAACATAAATGGCTTTGGAGAGTGGGAGAAGAGTTTGTCTCGTGATGATGATGCCAAAGACAACAGTGAAATGGGTAATGCTTTTGCCTCTGATAATGGACATGATTTTGGTAAAGAATCTAAAGATTCAGCTGAAGATCAAGTAGGATCTCAGAAACACGAATTGGATTCTGCCTGGCTTCTCCAACATCTTCAAGCAAGATATAATGAGATTGCAGATACCTATGGGTATTCAAAGGACTTGGCTACATATCTCAAATACTGTAGGGATGTTGTCTTTGCTGGATCAGAACCATCTTATGGTAATCACGAGGAAGAAAAAATGATAGAATACCTATGGAAATTTTATCAGAATGAAGAGGATACAAAACCATCAGAAAATGTAGAGCAGTCAAATACTTCTTTCAACCAAACGAGTTCCAGGGATAAAGGATGCATTGGCAAGATATCCAAGGAGGAAAAGATTAGAAAAAAAGGTTTTAATGAACTCTTTCCTGATGATGACACCAGCCTTGAAGATGTGAGCAACAATAATTCCCATGAGAGTTTGTCAGACAGTGAAGACTCAGATTCCCAAGAGCACAGTTCAGGAAAATCTCATGTCAAGGAAGCCATTAGACAGATGAAATTAGAGATGGAGGAGAACAGATTTTATTATATACCACCTAGTGTCAAGCGAAAAAGACTTGATTATATTCACTATGTGAGAAAGAGGGACGAAGGTGCGCTGACTTATGTTGCTCATGCTGATTATTACATTTTGCTTCGGGCTTGTGCCAGGATTGCACAAGTTGACATTCGGATTTTGCATATTGGTGTGTTGAGACTTGAGAGAAGACTTGCTTGGTTGGAAAAACGGATTGATCAATGCTTACATTCCAAACCAACTAGCATTTCTTGTCAATTTTGTTGTAATAAGGCCACGGAAAATGGATCTGATGGTCTTCCTGGATTATCAAATTTGAATATTTGA
>Glyma.11g111300.1.p sequence-type=predicted peptide transcript=Glyma.11g111300.1 locus=Glyma.11g111300 ID=Glyma.11g111300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVDVHKLICQTCNNVGVGDGSDGFFYCLRCGSQCEDVMDTAVDDDDLFNKSAVYLPSHQRQRSVAIKAEPISQYDSFYDSHSNFIRNLGLEDENPQRNDHVQVKREEEFDAAQFDEASPSVPADFGGSQVACFEDYHNEIRMRYVMGLQMMIELQCEALVKEFKVTPLICGLVGPIWLRFVSKTGIFGDDWADKVIHDSETQNEDEPEDYKLRAKYRTEPHNMFGKRAVMIWFRSLKKRIPLPCTVAVSFLACHVAREAVLPSDMMKWTLEGKLPYFSAFVEIEKRMGQPTSACPISSSVMFRPQQAIPVQKLESFAASIAQFIGLELPPVNFYAIAYLFLQKLSLPVEKILPYACRIYEWSMPPDLWLSLSSNYFRLPTHVCVMSILVVAIRILYNINGFGEWEKSLSRDDDAKDNSEMGNAFASDNGHDFGKESKDSAEDQVGSQKHELDSAWLLQHLQARYNEIADTYGYSKDLATYLKYCRDVVFAGSEPSYGNHEEEKMIEYLWKFYQNEEDTKPSENVEQSNTSFNQTSSRDKGCIGKISKEEKIRKKGFNELFPDDDTSLEDVSNNNSHESLSDSEDSDSQEHSSGKSHVKEAIRQMKLEMEENRFYYIPPSVKRKRLDYIHYVRKRDEGALTYVAHADYYILLRACARIAQVDIRILHIGVLRLERRLAWLEKRIDQCLHSKPTSISCQFCCNKATENGSDGLPGLSNLNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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