Glyma.11g107100

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Report for Sequence Feature Glyma.11g107100

Feature Type:	gene_model
Chromosome:	Gm11
Start:	8171836
stop:	8173327
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g107100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38620.1	AT	myb domain protein 4	JGI	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003682	GO-mf	chromatin binding	JGI	N/A	IEA
KOG0048	KOG	Transcription factor, Myb superfamily	JGI	N/A	IEA
PTHR10641	Panther	MYB-LIKE DNA-BINDING PROTEIN MYB	JGI	N/A	IEA
PF00249	PFAM	Myb-like DNA-binding domain	JGI	N/A	IEA

Proteins Associated with Glyma.11g107100

Locus	Gene Symbol	Protein Name
	MYBZ2	transcription factor MYBZ2

Expression Patterns of Glyma.11g107100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g107100

Paralog	Evidence	Comments
Glyma.12g032200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g107100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g11450	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.11g107100

Limit To All Plant Sequences

>Glyma.11g107100.1 sequence-type=CDS polypeptide=Glyma.11g107100.1.p locus=Glyma.11g107100 ID=Glyma.11g107100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACTAAAGAAGAAGATGACAGACTCATATCTTATATTCGAGCTCACGGCGAAGGCTGCTGGCGTTCACTCCCCAAAGCCGCCGGTCTTCTCCGGTGCGGCAAAAGCTGCCGTCTCCGGTGGATCAACTACCTCCGCCCCGACCTTAAAAGAGGTAACTTTACCGAAGAAGAAGACGAGCTCATCATCAAACTCCACAGTCTCCTCGGTAACAAGTGGTCTTTGATAGCTGGAAGATTGCCGGGGAGAACAGACAATGAAATAAAGAACTATTGGAATACGCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCATAGGCCACTCAACGAAGCTGCAACTGCTGCAACTGTTACAACTAATATATCTTTTGGCAAACAAGAACAACAAGAGACAAGTTCGAGTAACGGAAGCGTTGTTAAAGGTTCCATCTTGGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCAACAACAACAGACTCAGAAGAATCTTTGTTTCGTTTGCAGTTTGGGTTTGCACAACAGCAAAGATTGCAGCTGCAACGTTTCCAACGCTGTCACTGTCAACAACACCACTCCTTCTTCTGCTGCTGCTGCTGCTTATGATTTCTTGGGCATGAAAACCAGCGGTGTTTGGGATTGCACCCGCTTGGAAATGAAATGA

Predicted protein sequences of Glyma.11g107100

Limit To All Plant Sequences

>Glyma.11g107100.1.p sequence-type=predicted peptide transcript=Glyma.11g107100.1 locus=Glyma.11g107100 ID=Glyma.11g107100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAATAATVTTNISFGKQEQQETSSSNGSVVKGSILERCPDLNLELTISPPRQQQQTQKNLCFVCSLGLHNSKDCSCNVSNAVTVNNTTPSSAAAAAYDFLGMKTSGVWDCTRLEMK*

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