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Report for Sequence Feature Glyma.11g105900

Feature Type:gene_model
Chromosome:Gm11
Start:8052872
stop:8054855
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g105900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21060.1AT glycine-rich protein 2B JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PTHR11544Panther COLD SHOCK DOMAIN CONTAINING PROTEINS JGI N/AIEA
PTHR11544:SF12Panther PROTEIN CEY-1 JGI N/AIEA
PF00313PFAM 'Cold-shock' DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.11g105900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g105900 not represented in the dataset
Glyma.11g105900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g105900
ParalogEvidenceComments
Glyma.12g030800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g105900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.11g105900
>Glyma.11g105900.1 sequence-type=CDS polypeptide=Glyma.11g105900.1.p locus=Glyma.11g105900 ID=Glyma.11g105900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGGTAGGGTTTCTGGGAAGGTGAAGTGGTTCAACGATCAGAAGGGGTTTGGATTCATAACCCCTGACGATGGCAGCGAGGAACTCTTCGTTCACCAATCTCAGATCAAATCTGACGGTTTCCGAAGCCTAGCTGAAGGAGAGTCCGTTGAGTTCGCTATTGAATCTGAATCTGACGGACGCGCCAAGGCTGTTGATGTCACTGGCCCCGACGGCGCCAGCGTCCAGGGAACCAGACGCGGCGGTGATGGTGGCCGAAGCTATGGCGGGGGACGAGGAGGTGGTGGAGGTGGATATGGCGGTGGCGGCGGCTACGGTGGTGGCGGTGGCTATGGTGGAGGCGGTGGCTACGGTGGTGGCGGGCGAGGCGGTGGTGGCGGGGCTTGCTACAACTGCGGTGAATCGGGACATCTGACAGGTACGGCGGAGGCGGTGGTGGTGGTGGCAGGTATGGAGGCGGCGGTGGCGGGAGGTACGGTGGTGGTGGAGGAGGTGGTGGCGGCGGAGGAAGCTGCTACAGCTGTGGAGAGTCTGGGCATTTCGCCAGAGATTGCCCATCAAGTGCTCGTTGAAATTACTGTTATGGTGGTTTATGTTATGCGGATTGTTTTAAGTTTTTACTTTAACATGTTGTAG
Predicted protein sequences of Glyma.11g105900
>Glyma.11g105900.1.p sequence-type=predicted peptide transcript=Glyma.11g105900.1 locus=Glyma.11g105900 ID=Glyma.11g105900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGRVSGKVKWFNDQKGFGFITPDDGSEELFVHQSQIKSDGFRSLAEGESVEFAIESESDGRAKAVDVTGPDGASVQGTRRGGDGGRSYGGGRGGGGGGYGGGGGYGGGGGYGGGGGYGGGGRGGGGGACYNCGESGHLTGTAEAVVVVAGMEAAVAGGTVVVEEVVAAEEAATAVESLGISPEIAHQVLVEITVMVVYVMRIVLSFYFNML*






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