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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G47450.1 | AT | chloroplast signal recognition particle component (CAO) | JGI | N/A | IEA |
| GO:0009416 | GO-bp | response to light stimulus | EnsemblGenomes | N/A | IEA |
| GO:0045038 | GO-bp | protein import into chloroplast thylakoid membrane | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0080085 | GO-cc | signal recognition particle, chloroplast targeting | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| PF00023 | PFAM | Ankyrin repeat | JGI | N/A | IEA |
| PF00385 | PFAM | Chromo (CHRromatin Organisation MOdifier) domain | JGI | N/A | IEA |
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Glyma.11g097200 not represented in the dataset |
Glyma.11g097200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g10310 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g097200.1 sequence-type=CDS polypeptide=Glyma.11g097200.1.p locus=Glyma.11g097200 ID=Glyma.11g097200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGCCATATTCGCCACCAAACCCGCTTCCCATTCTCTCCTCTTAACTAAACTCTCTCCGAATCCCAAACACTTGTTCCCTCCACACCAACAATCCTTTCACAACATCCGCCACAAACCCACGCGCTTCCGCCCCGTCACCGCTGTTTTCCAAAACCAACATCAACAAGATGCAGCTGCAGCTTCCAACCACACCGAAGATGAGTCCTACGGCGAAGTCAAAGGCATCATTGGAAGCAGAGCCTTGGAAGCCGCCACCGGAATGGAGTACCTCATCGAGTGGAACGACGGCCACGCGCCGTCCTGGGTTCCCGCCGACTTCATAGCCAAAGACGTCGTCGACGAGTACGAAACTCCCTGGTGGACTGCCGCCAAGAAAGCCGACGAGTCCGCGTTGAAAAACTTAACCAAATCCGACGACGGCCGCGACGTCGACGCCGTGGACGCCGACGGCCGCACTGCGCTCCTCTTCGTCGCCGGACTCGGCTCGGAGTCCTGCGTGAAGCTGCTAGCGGAGGCCGGCGCGAATCTGGACCACCGCGACCGGAGCGGCGGCCTCGCGGCTCTGCACATGGCGGCGGGGTACGTCAGGCCCGGCGTGGCGAAGGTTCTCTTGGATCTCGGCGCGGATCCCGAGGTGGCGGACGACCGCGGGAGAACGGCGTTGGATCTGGCGAGGGAGATTCTGAAGGTGACGCCGAAGGGGAATCCGATGCAGTTCGGACGCAGGATTGGACTGGAAGGTGTGATTAGGGTTTTGGAAGGGGCAGTGTTCGAGTACGCGGAGGTGCAGGAGATTCTGGAACGGAGAGGAAAGGGTGAGAATTTGGAGTATCTTGTGCGGTGGAAGGACGGTGGTGCCAACGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTGAAAGACTACGAGGCTGGCCTCGAGTACGCCGTCGCTGAGGCGGTGCTCGCGAAAAGGGTAGCGGATGAAGGGACGCCGGAGTTTTTGGTTAAATGGGCCGATTTGGAGGAGCCCACATGGGAGCCCGAGGAGAATGTGGACCCAGAGCTTGTCAAAGCTTTCGAGGGAAGTAACAACCAGGCCCAGCCCAGTAGTAATGGGCCCGCTGTGGTCTTTTCCAATCAGGATAGCCCTAGCCTGTGA
>Glyma.11g097200.1.p sequence-type=predicted peptide transcript=Glyma.11g097200.1 locus=Glyma.11g097200 ID=Glyma.11g097200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEAIFATKPASHSLLLTKLSPNPKHLFPPHQQSFHNIRHKPTRFRPVTAVFQNQHQQDAAAASNHTEDESYGEVKGIIGSRALEAATGMEYLIEWNDGHAPSWVPADFIAKDVVDEYETPWWTAAKKADESALKNLTKSDDGRDVDAVDADGRTALLFVAGLGSESCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKVTPKGNPMQFGRRIGLEGVIRVLEGAVFEYAEVQEILERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVKDYEAGLEYAVAEAVLAKRVADEGTPEFLVKWADLEEPTWEPEENVDPELVKAFEGSNNQAQPSSNGPAVVFSNQDSPSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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