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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22200.1 | AT | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | JGI | N/A | IEA |
| AT3G22200.2 | AT | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0008483 | GO-mf | transaminase activity | EnsemblGenomes | N/A | IEA |
| GO:0008483 | GO-mf | transaminase activity | JGI | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | JGI | N/A | IEA |
| KOG1404 | KOG | Alanine-glyoxylate aminotransferase AGT2 | JGI | N/A | IEA |
| PTHR11986 | Panther | AMINOTRANSFERASE CLASS III | JGI | N/A | IEA |
| PTHR11986:SF24 | Panther | AMINOTRANSFERASE CLASS-III | JGI | N/A | IEA |
| PF00202 | PFAM | Aminotransferase class-III | JGI | N/A | IEA |
| PWY-4321 | SoyCyc9 | L-glutamate degradation IV | Plant Metabolic Network | ISS | |
| PWY-6535 | SoyCyc9 | 4-aminobutanoate degradation I | Plant Metabolic Network | ISS | |
| GN7V-44898 | SoyCyc9-rxn | 4-aminobutyrate transaminase | Plant Metabolic Network | ISS |
|
Glyma.11g096200 not represented in the dataset |
Glyma.11g096200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g022300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g10190 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g096200.2 sequence-type=transcript locus=Glyma.11g096200 ID=Glyma.11g096200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TCGTGCGTGAGTTTAAGACAGAGCCCAGAGTGCTCAAATTTACGCGTGCCACATAACTTGGATCACTATTTCTTCTTCTTAGTTCTCACTCTCACTGTCTCCGTCGTCTTTTTCTCCAAAGTTTCGGTGCTGACGGATAGAACACTACCTATTCAGCCGCCATGCACACTCTCCTCCGATCCACTCTCAGGACCAAGACTGCTTCATCTTTAGCATATGCTGTGGTTTCCAGAAGTGCTCACGAAAATCTCCTTCAGGCTCCCTTATTGTCTAGATCAAATAGCACTGAGGCTTCATTGGCAAAGGATAATTCCTCTAATGATGTAAAAAATGGTCAAGGGTACAAAGGTCATAGTATGCTTGCTCCTTTCACGGCTGGGTGGCAGTCTTCTGATTTGCACCCTCTGATCATAGAAAAGTCAGAGGGAAGCTATGTATATGACATTAATGGGAAGAAATATCTTGATGCACTTGCTGGTCTATGGGCCACTTCTTTAGGGGGAAGTGAGCCACGCCTTGTTGATGCTGCCGTTGCACAACTAAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGAACCACATTACCTTCTTTGGATCTAGCAAAGGAACTCCTAGAAATGTTCACAGCCAGAAAAATGGGGAAAGCTTTTTTTGTTAATAGTGGATCAGAAGCCAATGACACTCAGGTGAAACTTGTATGGTATTATAACAATGCGCTTGGAAGACCAGATAAGAAGAAATTCATAGCTCGTGCTAAATCGTATCATGGTTCAACATTGATAGCAGCCAGTCTTTCTGGCCTTCCGGCTCTGCATCAAAAATTTGATTTGCCAGCTCCTTTTGTATTACACACTGACTGTCCACATTACTGGCGGTATCATCTTCCAGGTGAGACAGAGGAAGAATTTTCAACCAGATTAGCCAATAATTTGGAGCAGTTGATTCTGAAAGAGGGACCAGAGACTATTGCTGCATTTATTGCTGAACCTGTAATGGGGGCAGGAGGTGTAATACCTCCACCATCAACTTATTTTGAGAAGGTCCAAGCCGTTGTCAAGAAGTATGACATTCTTTTTATTGCAGATGAGGTAATATGTGCCTTTGGAAGGCTTGGGACAATGTTTGGATGTGACAAGTACAACATTAAGCCAGACCTTGTATCCCTGGCTAAGGCACTATCTTCTGCATATTTGCCAATTGGAGCTGTCCTTGTAAGCCCGGAAATATCAGAAGTTATACATGATCAAAGCAACAAACTAGGTTCATTTTCTCATGGTTTTACTTATTCTGGACACCCTGCAGCCTGTGCAGTTGCAATTGAAGCACTCAAGATCTATAAGGAAAGAAATATTGTTGACCAAGTGAACAAGATCGCCCCAAGGTTTCAAGATGGCATAAAAGCTTTTTCTGACAGTCCCATCATTGGAGAGATACGGGGAACTGGCTTGATTCTGGGCACTGAGTTCACAGACAACAAGTCACCTAATGATCCATTTCCTCCTGAATGGGGAATAGGTGCCTATTTTGGAGCACAATGTGAGAAGCATGGGATGTTAGTTCGTGTTGCGGGAGATAACATCATGATGTCTCCACCATATATTATATCTCCTGGAGAAGTTGAAGAGTTAATCAGCATTTATGGGAAAGCTTTGAAAGAAACGGAAAAGAAGGTACAGGAGCTCAAGTCTCAGCGCAAGTAGCTTAGGCCTCATGATGGAATAATAAACTCTGCTGCGCCCACTTCCGGGGGAAAAGGAAATATTGTAGTAACTTGACAAGACTTTGTTCCAACCTTTTCGTTATTGTAAATGTCAATAAATTGGTTTCCTAGTTGCTTCCTAATTATATGTTGTAGTTATACATATGCTTAGAATAATGCTCGTTACACATCTCCACATTGCATGTAGCATAGCCTCTCACTAATGACGTGGCAGCATCAATAGTGCAAGTGTAGAAATTTTAGTAAGCCAAACTGTAATAAGGTGATGGAAATTGGGCGAAGGGGAGAAATGTGTGTACGTTTGTGTTTGTGGAAAACAAAAGCACCCCGTCGATACGAAGGATGTGTTGTGCATTGGCCATTAAAAAATTGTAGTGATCTAGTGTAACTAATGACTCGTAGAAAAGCGCGAGTTAGATGTGAACAAGGTGTTTGCGCAATTATCATTAAGCTTATGTTATTGCAAGTCCAATACTATTCAAGGTTTAATTCATTTACAAGTT
>Glyma.11g096200.1 sequence-type=CDS polypeptide=Glyma.11g096200.1.p locus=Glyma.11g096200 ID=Glyma.11g096200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGCTTTCCAAGGATGATGTTGTTGACATCAAAGATCTGGAAGCCAACAAACAGAAATTGAATATACACATTCATCACTTAAAGACTGCTTCATCTTTAGCATATGCTGTGGTTTCCAGAAGTGCTCACGAAAATCTCCTTCAGGCTCCCTTATTGTCTAGATCAAATAGCACTGAGGCTTCATTGGCAAAGGATAATTCCTCTAATGATGTAAAAAATGGTCAAGGGTACAAAGGTCATAGTATGCTTGCTCCTTTCACGGCTGGGTGGCAGTCTTCTGATTTGCACCCTCTGATCATAGAAAAGTCAGAGGGAAGCTATGTATATGACATTAATGGGAAGAAATATCTTGATGCACTTGCTGGTCTATGGGCCACTTCTTTAGGGGGAAGTGAGCCACGCCTTGTTGATGCTGCCGTTGCACAACTAAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGAACCACATTACCTTCTTTGGATCTAGCAAAGGAACTCCTAGAAATGTTCACAGCCAGAAAAATGGGGAAAGCTTTTTTTGTTAATAGTGGATCAGAAGCCAATGACACTCAGGTGAAACTTGTATGGTATTATAACAATGCGCTTGGAAGACCAGATAAGAAGAAATTCATAGCTCGTGCTAAATCGTATCATGGTTCAACATTGATAGCAGCCAGTCTTTCTGGCCTTCCGGCTCTGCATCAAAAATTTGATTTGCCAGCTCCTTTTGTATTACACACTGACTGTCCACATTACTGGCGGTATCATCTTCCAGGTGAGACAGAGGAAGAATTTTCAACCAGATTAGCCAATAATTTGGAGCAGTTGATTCTGAAAGAGGGACCAGAGACTATTGCTGCATTTATTGCTGAACCTGTAATGGGGGCAGGAGGTGTAATACCTCCACCATCAACTTATTTTGAGAAGGTCCAAGCCGTTGTCAAGAAGTATGACATTCTTTTTATTGCAGATGAGGTAATATGTGCCTTTGGAAGGCTTGGGACAATGTTTGGATGTGACAAGTACAACATTAAGCCAGACCTTGTATCCCTGGCTAAGGCACTATCTTCTGCATATTTGCCAATTGGAGCTGTCCTTGTAAGCCCGGAAATATCAGAAGTTATACATGATCAAAGCAACAAACTAGGTTCATTTTCTCATGGTTTTACTTATTCTGGACACCCTGCAGCCTGTGCAGTTGCAATTGAAGCACTCAAGATCTATAAGGAAAGAAATATTGTTGACCAAGTGAACAAGATCGCCCCAAGGTTTCAAGATGGCATAAAAGCTTTTTCTGACAGTCCCATCATTGGAGAGATACGGGGAACTGGCTTGATTCTGGGCACTGAGTTCACAGACAACAAGTCACCTAATGATCCATTTCCTCCTGAATGGGGAATAGGTGCCTATTTTGGAGCACAATGTGAGAAGCATGGGATGTTAGTTCGTGTTGCGGGAGATAACATCATGATGTCTCCACCATATATTATATCTCCTGGAGAAGTTGAAGAGTTAATCAGCATTTATGGGAAAGCTTTGAAAGAAACGGAAAAGAAGGTACAGGAGCTCAAGTCTCAGCGCAAGTAG >Glyma.11g096200.2 sequence-type=CDS polypeptide=Glyma.11g096200.2.p locus=Glyma.11g096200 ID=Glyma.11g096200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCACACTCTCCTCCGATCCACTCTCAGGACCAAGACTGCTTCATCTTTAGCATATGCTGTGGTTTCCAGAAGTGCTCACGAAAATCTCCTTCAGGCTCCCTTATTGTCTAGATCAAATAGCACTGAGGCTTCATTGGCAAAGGATAATTCCTCTAATGATGTAAAAAATGGTCAAGGGTACAAAGGTCATAGTATGCTTGCTCCTTTCACGGCTGGGTGGCAGTCTTCTGATTTGCACCCTCTGATCATAGAAAAGTCAGAGGGAAGCTATGTATATGACATTAATGGGAAGAAATATCTTGATGCACTTGCTGGTCTATGGGCCACTTCTTTAGGGGGAAGTGAGCCACGCCTTGTTGATGCTGCCGTTGCACAACTAAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGAACCACATTACCTTCTTTGGATCTAGCAAAGGAACTCCTAGAAATGTTCACAGCCAGAAAAATGGGGAAAGCTTTTTTTGTTAATAGTGGATCAGAAGCCAATGACACTCAGGTGAAACTTGTATGGTATTATAACAATGCGCTTGGAAGACCAGATAAGAAGAAATTCATAGCTCGTGCTAAATCGTATCATGGTTCAACATTGATAGCAGCCAGTCTTTCTGGCCTTCCGGCTCTGCATCAAAAATTTGATTTGCCAGCTCCTTTTGTATTACACACTGACTGTCCACATTACTGGCGGTATCATCTTCCAGGTGAGACAGAGGAAGAATTTTCAACCAGATTAGCCAATAATTTGGAGCAGTTGATTCTGAAAGAGGGACCAGAGACTATTGCTGCATTTATTGCTGAACCTGTAATGGGGGCAGGAGGTGTAATACCTCCACCATCAACTTATTTTGAGAAGGTCCAAGCCGTTGTCAAGAAGTATGACATTCTTTTTATTGCAGATGAGGTAATATGTGCCTTTGGAAGGCTTGGGACAATGTTTGGATGTGACAAGTACAACATTAAGCCAGACCTTGTATCCCTGGCTAAGGCACTATCTTCTGCATATTTGCCAATTGGAGCTGTCCTTGTAAGCCCGGAAATATCAGAAGTTATACATGATCAAAGCAACAAACTAGGTTCATTTTCTCATGGTTTTACTTATTCTGGACACCCTGCAGCCTGTGCAGTTGCAATTGAAGCACTCAAGATCTATAAGGAAAGAAATATTGTTGACCAAGTGAACAAGATCGCCCCAAGGTTTCAAGATGGCATAAAAGCTTTTTCTGACAGTCCCATCATTGGAGAGATACGGGGAACTGGCTTGATTCTGGGCACTGAGTTCACAGACAACAAGTCACCTAATGATCCATTTCCTCCTGAATGGGGAATAGGTGCCTATTTTGGAGCACAATGTGAGAAGCATGGGATGTTAGTTCGTGTTGCGGGAGATAACATCATGATGTCTCCACCATATATTATATCTCCTGGAGAAGTTGAAGAGTTAATCAGCATTTATGGGAAAGCTTTGAAAGAAACGGAAAAGAAGGTACAGGAGCTCAAGTCTCAGCGCAAGTAG
>Glyma.11g096200.1.p sequence-type=predicted peptide transcript=Glyma.11g096200.1 locus=Glyma.11g096200 ID=Glyma.11g096200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MELSKDDVVDIKDLEANKQKLNIHIHHLKTASSLAYAVVSRSAHENLLQAPLLSRSNSTEASLAKDNSSNDVKNGQGYKGHSMLAPFTAGWQSSDLHPLIIEKSEGSYVYDINGKKYLDALAGLWATSLGGSEPRLVDAAVAQLKKLPFYHSFWNRTTLPSLDLAKELLEMFTARKMGKAFFVNSGSEANDTQVKLVWYYNNALGRPDKKKFIARAKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLANNLEQLILKEGPETIAAFIAEPVMGAGGVIPPPSTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSPEISEVIHDQSNKLGSFSHGFTYSGHPAACAVAIEALKIYKERNIVDQVNKIAPRFQDGIKAFSDSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGIGAYFGAQCEKHGMLVRVAGDNIMMSPPYIISPGEVEELISIYGKALKETEKKVQELKSQRK* >Glyma.11g096200.2.p sequence-type=predicted peptide transcript=Glyma.11g096200.2 locus=Glyma.11g096200 ID=Glyma.11g096200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MHTLLRSTLRTKTASSLAYAVVSRSAHENLLQAPLLSRSNSTEASLAKDNSSNDVKNGQGYKGHSMLAPFTAGWQSSDLHPLIIEKSEGSYVYDINGKKYLDALAGLWATSLGGSEPRLVDAAVAQLKKLPFYHSFWNRTTLPSLDLAKELLEMFTARKMGKAFFVNSGSEANDTQVKLVWYYNNALGRPDKKKFIARAKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLANNLEQLILKEGPETIAAFIAEPVMGAGGVIPPPSTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSPEISEVIHDQSNKLGSFSHGFTYSGHPAACAVAIEALKIYKERNIVDQVNKIAPRFQDGIKAFSDSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGIGAYFGAQCEKHGMLVRVAGDNIMMSPPYIISPGEVEELISIYGKALKETEKKVQELKSQRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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