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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04590.1 | AT | sulfite reductase | JGI | N/A | IEA |
| GO:0006260 | GO-bp | DNA replication | EnsemblGenomes | N/A | IEA |
| GO:0006275 | GO-bp | regulation of DNA replication | EnsemblGenomes | N/A | IEA |
| GO:0006323 | GO-bp | DNA packaging | EnsemblGenomes | N/A | IEA |
| GO:0019419 | GO-bp | sulfate reduction | EnsemblGenomes | N/A | IEA |
| GO:0019424 | GO-bp | sulfide oxidation, using siroheme sulfite reductase | EnsemblGenomes | N/A | IEA |
| GO:0045892 | GO-bp | negative regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:1900160 | GO-bp | plastid DNA packaging | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009532 | GO-cc | plastid stroma | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
| GO:0042644 | GO-cc | chloroplast nucleoid | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0016002 | GO-mf | sulfite reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0050311 | GO-mf | sulfite reductase (ferredoxin) activity | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| KOG0560 | KOG | Sulfite reductase (ferredoxin) | JGI | N/A | IEA |
| PTHR11493 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR11493:SF2 | Panther | JGI | N/A | IEA | |
| PF01077 | PFAM | Nitrite and sulphite reductase 4Fe-4S domain | JGI | N/A | IEA |
| PF03460 | PFAM | Nitrite/Sulfite reductase ferredoxin-like half domain | JGI | N/A | IEA |
| SULFMETII-PWY | SoyCyc9 | sulfate reduction II (assimilatory) | Plant Metabolic Network | ISS | |
| GN7V-46385 | SoyCyc9-rxn | sulfite reductase (ferredoxin) | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| SIR | sulfite reductase [ferredoxin], chloroplastic |
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Glyma.11g093200 not represented in the dataset |
Glyma.11g093200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g019400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g09890 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g093200.1 sequence-type=CDS polypeptide=Glyma.11g093200.1.p locus=Glyma.11g093200 ID=Glyma.11g093200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACGACGTCTTTTGGACCAGCCACCACCTCAGCGCCGCTTAAGGACCACAAAGTTCAGATCCCAAGCTTCCATGGCTTGAGGTCTTCCTCCGCCTCTGCTCTCCCCCGCAATGCCCTCTCCCTTCCTTCATCCACTCGCTCTCTCTCCCTCATACGTGCTGTTTCCACGCCTGCGCAGTCTGAAACTGCCACTGTCAAGCGCAGCAAAGTCGAAATATTCAAAGAACAAAGCAATTTCATAAGATATCCTCTTAACGAGGACATTTTGACGGATGCTCCTAATATAAGTGAAGCCGCCACTCAATTGATCAAGTTTCATGGTAGCTATCAACAGTACAATAGAGAGGAGCGTGGTTCCAGAAGCTACTCTTTCATGATACGCACTAAGAATCCATGCGGGAAGGTTTCCAACCAACTTTACCTCACCATGGATGATCTTGCTGACCAGTTTGGGATTGGGACGCTTCGCTTGACCACCAGGCAGACGTTTCAGCTCCATGGTGTTCTCAAGAAGGACCTTAAAACAGTCATGGGTACCATTATTAGGAACATGGGCTCGACTCTTGGTGCTTGTGGCGACCTAAACAGGAATGTGCTTGCTCCTGCAGCTCCCCTTGCAAGAAAAGATTACCTCTTTGCTCAACAAACTGCTGAGAACATTGCTGCGCTCCTCGCTCCTCAGTCTGGTTTCTACTATGATATTTGGGTGGATGGGGAAAAGATTTTGACATCAGAACCACCTGAAGTAGTTCAGGCACGAAATGACAATTCTCATGGTACAAACTTCCCGGATTCCCCCGAGCCCATCTATGGAACTCAGTTCTTGCCAAGGAAATTCAAAATTGCTGTTACTGTGCCAACTGATAACTCCGTGGACATTCTCACAAATGATATTGGTGTTGTTGTTGTTACCGATGACGATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGCTTGGCAGAACCAATAGGTTACGTACCAAAGGAGGATATTTTGTATGCAGTGAAAGCAATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGATTGAAATATTTGATAAGCTCTTGGGGAATTGAAAAGTTTAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGGGCGATGGCAAACTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGTGGAAACATGAAAAAGACATTGAGGGAGGTTATCGAGAAGTATAATTTGAATGTAAGAATCACTCCAAATCAGAATATCATCTTGACTGATGTTCGTGCTGCATGGAAGCGTCCCATTACAACCACGCTTGCTCAAGCTGGTTTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTATGTCCTCTGGCAATTACTGAAGCTGAACGTGGGATACCTAACATACTTAAGCGGATTCGTGATGTTTTTGATAAGGTTGGCCTGAAGTATAGTGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAACTTGGACTAGTTGGTGATGGTCCAAATAGCTATCAGATTTGGCTTGGAGGAAACCATAAACAAACATCATTAGCTCGAAGTTTCATGGACAGGGTGAAGATTCTAGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACCGAATGGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTAGCACCATCACGCCACAACCTCAAGCTTTTTGCTGACAAGGAGACATATGAATCAATGGATGCATTAGCAAAGCTTCAAAACAAGACTGCTCATCAGTTGGCCATGGAAGTTATCCGTAATTATGTTGCTTCCAACCAAAATGGAAAAGGCGAATGA
>Glyma.11g093200.1.p sequence-type=predicted peptide transcript=Glyma.11g093200.1 locus=Glyma.11g093200 ID=Glyma.11g093200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTTSFGPATTSAPLKDHKVQIPSFHGLRSSSASALPRNALSLPSSTRSLSLIRAVSTPAQSETATVKRSKVEIFKEQSNFIRYPLNEDILTDAPNISEAATQLIKFHGSYQQYNREERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMGTIIRNMGSTLGACGDLNRNVLAPAAPLARKDYLFAQQTAENIAALLAPQSGFYYDIWVDGEKILTSEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVTDDDGEPQGFNIYVGGGMGRTHRLETTFPRLAEPIGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRLKYLISSWGIEKFRSVVEQYYGKKFEPFRALPEWEFKSYLGWHEQGDGKLFYGLHVDNGRIGGNMKKTLREVIEKYNLNVRITPNQNIILTDVRAAWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRDVFDKVGLKYSESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNHKQTSLARSFMDRVKILDLEKVLEPLFYYWKQKRQSKESFGDFTNRMGFEKLKEYIEKWEGPVVAPSRHNLKLFADKETYESMDALAKLQNKTAHQLAMEVIRNYVASNQNGKGE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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