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Report for Sequence Feature Glyma.11g090900

Feature Type:gene_model
Chromosome:Gm11
Start:6874416
stop:6879692
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g090900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G19210.1AT RNAse l inhibitor protein 2 JGI N/AIEA
GO:0000054GO-bp ribosomal subunit export from nucleus EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006415GO-bp translational termination EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005852GO-cc eukaryotic translation initiation factor 3 complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0009055GO-mf electron carrier activity JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
GO:0043024GO-mf ribosomal small subunit binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding JGI N/AIEA
KOG0063 KOG RNAse L inhibitor, ABC superfamily JGI N/AIEA
PTHR19248Panther ATP-BINDING TRANSPORT PROTEIN-RELATED JGI N/AIEA
PF00005PFAM ABC transporter JGI N/AIEA
PF00037PFAM 4Fe-4S binding domain JGI N/AIEA
PF04068PFAM Possible Fer4-like domain in RNase L inhibitor, RLI JGI N/AIEA

Expression Patterns of Glyma.11g090900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g090900 not represented in the dataset
Glyma.11g090900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g090900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g09630 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.11g090900
>Glyma.11g090900.2 sequence-type=transcript locus=Glyma.11g090900 ID=Glyma.11g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACGGTGAAGCAAGTAACCCTAATGCTATGCTATATGATTTTCTGAACGTTCTCACGACACGCCTACTCATTGCACTCTTCGATCGCAACTCTCTTTTTCTTCCAAAAGGGAAAACGAATCTCAAACTTCACAAGTGTTTGAGGCGCCATGGCGGATCGGTTGACGCGTATTGCCATCGTCAGCAACGACAGGTGCAAGCCCAAAAAGTGCCGCCAGGAGTGCAAGAAGAGTTGCCCCGTCGTCAGAACCGGGAGGTTGTGTATTGAGGTTACTTCCTCGTCCAAGATTGCTTTCATTTCGGAGGAATTGTGTATTGGATGCGGTATTTGTGTTAAGAAATGTCCTTTTGAAGCTATTCAGATTATCAACTTGCCGAAGGACTTGGACAGGGATACTACTCATAGATATGGTCCTAATACTTTTAAGCTGCATAGGTTGCCGGTTCCGAGGCCCGGGCAGGTGCTTGGGTTGGTTGGGACTAATGGGATTGGGAAGTCCACCGCTCTTAAAGTTTTGGCCGGGAAACTGAAGCCGAACTTGGGTCGATTCACTAATCCCCCTGATTGGCAGGAAATTTTGACCTATTTTCGAGGATCTGAACTGCAGAATTATTTTACTCGGATTCTAGAGGATGATTTGAAGGCTATCATCAAGCCTCAGTATGTTGACCATATTCCAAAAGCTGTGCAAGGGAATGTGGGGCAGGTGCTAGACCAGAAAGATGAGAGAGAGAAGAAGGAGGAGCTTTGTGCTGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGTGATCTTTCGGGTGGTGAGCTCCAAAGGTTTGCCATTGCGGTTGTTGCGATCCAGAATGCTGAGATATACATGTTTGATGAACCTTCTAGTTATCTTGATGTGAAACAGAGGCTGAAAGCTGCCCAAGTTATTCGATCATTGCTTAGGCCTAATAGCTATGTAATTGTTGTTGAGCATGATCTTAGTGTCTTGGACTACTTATCGGACTTTATTTGCTGTCTATATGGTAAACCTGGTGCATATGGAGTGGTGACACTTCCTTTCTCGGTCAGAGAAGGAATTAACATTTTCTTGGCTGGCTTTGTTCCAACAGAAAATCTTAGGTTCCGTGATGACTCACTCACCTTCAAGGTTGCTGAGACTCCACAGGAAACTGCTGAGGAAGCTCAGACATATGCTCGATACAAATACCCAACCATGAGCAAAACTCAAGGCAATTTTAGACTTCGTGTAGCTGAAGGAGAATTTACTGATTCTCAGATTATTGTGATGCTGGGTGAGAATGGGACAGGAAAGACGACATTTATTCGAATGCTGGCTGGTTTATTGAAACCTGACACCATAGAAGGTGGATCTGAGGTGGAGATGCCTGAATTTAATGTTTCATACAAGCCTCAGAAGATTAGCCCGAAGTTCCAATCAACTGTTAGGCACTTGCTACATCAAAAAATACGTGATGCATATACTCATCCCCAGTTTGTGTCAGATGTGATGAAGCCACTTCTTATTGAACAGTTAATGGACCAAGAAGTTGTGAATCTTTCTGGTGGAGAGTTGCAGAGAGTTGCTCTGTGTCTCTGTCTTGGAAAGCCTGCAGACATCTATCTGATAGATGAGCCAAGTGCGTATCTAGATTCTGAACAGCGAATTATTGCTGCCAAAGTCATTAAGAGGTTTATTCTTCATGCAAAGAAAACGGCTTTTGTCGTTGAGCATGATTTCATCATGGCAACATATCTTGCAGACAGAGTTATTGTTTATGAGGGCCAACCATCAATTGACTGTATTGCAAATACTCCGCAATCATTGTTGTCTGGGATGAACCTTTTCTTATCATTCTTTCACCAACACAACCTTGCATCTGTTTGAGCTTTTCATGGGATCTCAGATTTGGTTCAGTTCATGCCTTGAAATATAAGATTGCCATTTTTGCCGATGAAAGCATCTTTCTCAATGAATAGAGGAGCCTGCATGCAATTGCAAGCCCTATGTTGGTTGGTGCATTTTGTATATTTACCCTTATATTTAGTGCAGTTACTCATCACCAGGTTTGCTACGACTTGGGTGGGTGAATCTGAATATTACATGAGTTTATATTGGTCATGGTTTTCATTCGATGTCCTAAGTCCAGAGGAACATTCATAATGTCAGACTGAGTTTATCGCCAATTTCAGTTGAGTATGTAACGAAGTTTACGTTCATTCCATGTTACTTAATTTAGATAGATGTCTTCTGTTTGGAATATGTTGTCGTTGAGGCTGATATCTTCGTGGATATATATCATTACATTTTTTAGATGAAATTGCGGCTATTATGTGATTTTATTTG
Coding sequences of Glyma.11g090900
>Glyma.11g090900.1 sequence-type=CDS polypeptide=Glyma.11g090900.1.p locus=Glyma.11g090900 ID=Glyma.11g090900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATCGGTTGACGCGTATTGCCATCGTCAGCAACGACAGGTGCAAGCCCAAAAAGTGCCGCCAGGAGTGCAAGAAGAGTTGCCCCGTCGTCAGAACCGGGAGGTTGTGTATTGAGGTTACTTCCTCGTCCAAGATTGCTTTCATTTCGGAGGAATTGTGTATTGGATGCGGTATTTGTGTTAAGAAATGTCCTTTTGAAGCTATTCAGATTATCAACTTGCCGAAGGACTTGGACAGGGATACTACTCATAGATATGGTCCTAATACTTTTAAGCTGCATAGGTTGCCGGTTCCGAGGCCCGGGCAGGTGCTTGGGTTGGTTGGGACTAATGGGATTGGGAAGTCCACCGCTCTTAAAGTTTTGGCCGGGAAACTGAAGCCGAACTTGGGTCGATTCACTAATCCCCCTGATTGGCAGGAAATTTTGACCTATTTTCGAGGATCTGAACTGCAGAATTATTTTACTCGGATTCTAGAGGATGATTTGAAGGCTATCATCAAGCCTCAGTATGTTGACCATATTCCAAAAGCTGTGCAAGGGAATGTGGGGCAGGTGCTAGACCAGAAAGATGAGAGAGAGAAGAAGGAGGAGCTTTGTGCTGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGTGATCTTTCGGGTGGTGAGCTCCAAAGGTTTGCCATTGCGGTTGTTGCGATCCAGAATGCTGAGATATACATGTTTGATGAACCTTCTAGTTATCTTGATGTGAAACAGAGGCTGAAAGCTGCCCAAGTTATTCGATCATTGCTTAGGCCTAATAGCTATGTAATTGTTGTTGAGCATGATCTTAGTGTCTTGGACTACTTATCGGACTTTATTTGCTGTCTATATGGTAAACCTGGTGCATATGGAGTGGTGACACTTCCTTTCTCGGTCAGAGAAGGAATTAACATTTTCTTGGCTGGCTTTGTTCCAACAGAAAATCTTAGGTTCCGTGATGACTCACTCACCTTCAAGGTTGCTGAGACTCCACAGGAAACTGCTGAGGAAGCTCAGACATATGCTCGATACAAATACCCAACCATGAGCAAAACTCAAGGCAATTTTAGACTTCGTGTAGCTGAAGGAGAATTTACTGATTCTCAGATTATTGTGATGCTGGGTGAGAATGGGACAGGAAAGACGACATTTATTCGAATGCTGGCTGGTTTATTGAAACCTGACACCATAGAAGGTGGATCTGAGGTGGAGATGCCTGAATTTAATGTTTCATACAAGCCTCAGAAGATTAGCCCGAAGTTCCAATCAACTGTTAGGCACTTGCTACATCAAAAAATACGTGATGCATATACTCATCCCCAGTTTGTGTCAGATGTGATGAAGCCACTTCTTATTGAACAGTTAATGGACCAAGAAGTTGTGAATCTTTCTGGTGGAGAGTTGCAGAGAGTTGCTCTGTGTCTCTGTCTTGGAAAGCCTGCAGACATCTATCTGATAGATGAGCCAAGTGCGTATCTAGATTCTGAACAGCGAATTATTGCTGCCAAAGTCATTAAGAGGTTTATTCTTCATGCAAAGAAAACGGCTTTTGTCGTTGAGCATGATTTCATCATGGCAACATATCTTGCAGACAGAGTTATTGTTTATGAGGGCCAACCATCAATTGACTGTATTGCAAATACTCCGCAATCATTGTTGTCTGGGATGAACCTTTTCTTATCACATCTTGATATCACATTTAGAAGGGACCCAACTAATTTTCGCCCAAGGATCAACAAACTTGATTCAACCAAGGACAGAGAACAAAAGTCTGCCGGGTCTTATTATTACCTTGATGACTGA

>Glyma.11g090900.2 sequence-type=CDS polypeptide=Glyma.11g090900.2.p locus=Glyma.11g090900 ID=Glyma.11g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATCGGTTGACGCGTATTGCCATCGTCAGCAACGACAGGTGCAAGCCCAAAAAGTGCCGCCAGGAGTGCAAGAAGAGTTGCCCCGTCGTCAGAACCGGGAGGTTGTGTATTGAGGTTACTTCCTCGTCCAAGATTGCTTTCATTTCGGAGGAATTGTGTATTGGATGCGGTATTTGTGTTAAGAAATGTCCTTTTGAAGCTATTCAGATTATCAACTTGCCGAAGGACTTGGACAGGGATACTACTCATAGATATGGTCCTAATACTTTTAAGCTGCATAGGTTGCCGGTTCCGAGGCCCGGGCAGGTGCTTGGGTTGGTTGGGACTAATGGGATTGGGAAGTCCACCGCTCTTAAAGTTTTGGCCGGGAAACTGAAGCCGAACTTGGGTCGATTCACTAATCCCCCTGATTGGCAGGAAATTTTGACCTATTTTCGAGGATCTGAACTGCAGAATTATTTTACTCGGATTCTAGAGGATGATTTGAAGGCTATCATCAAGCCTCAGTATGTTGACCATATTCCAAAAGCTGTGCAAGGGAATGTGGGGCAGGTGCTAGACCAGAAAGATGAGAGAGAGAAGAAGGAGGAGCTTTGTGCTGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGTGATCTTTCGGGTGGTGAGCTCCAAAGGTTTGCCATTGCGGTTGTTGCGATCCAGAATGCTGAGATATACATGTTTGATGAACCTTCTAGTTATCTTGATGTGAAACAGAGGCTGAAAGCTGCCCAAGTTATTCGATCATTGCTTAGGCCTAATAGCTATGTAATTGTTGTTGAGCATGATCTTAGTGTCTTGGACTACTTATCGGACTTTATTTGCTGTCTATATGGTAAACCTGGTGCATATGGAGTGGTGACACTTCCTTTCTCGGTCAGAGAAGGAATTAACATTTTCTTGGCTGGCTTTGTTCCAACAGAAAATCTTAGGTTCCGTGATGACTCACTCACCTTCAAGGTTGCTGAGACTCCACAGGAAACTGCTGAGGAAGCTCAGACATATGCTCGATACAAATACCCAACCATGAGCAAAACTCAAGGCAATTTTAGACTTCGTGTAGCTGAAGGAGAATTTACTGATTCTCAGATTATTGTGATGCTGGGTGAGAATGGGACAGGAAAGACGACATTTATTCGAATGCTGGCTGGTTTATTGAAACCTGACACCATAGAAGGTGGATCTGAGGTGGAGATGCCTGAATTTAATGTTTCATACAAGCCTCAGAAGATTAGCCCGAAGTTCCAATCAACTGTTAGGCACTTGCTACATCAAAAAATACGTGATGCATATACTCATCCCCAGTTTGTGTCAGATGTGATGAAGCCACTTCTTATTGAACAGTTAATGGACCAAGAAGTTGTGAATCTTTCTGGTGGAGAGTTGCAGAGAGTTGCTCTGTGTCTCTGTCTTGGAAAGCCTGCAGACATCTATCTGATAGATGAGCCAAGTGCGTATCTAGATTCTGAACAGCGAATTATTGCTGCCAAAGTCATTAAGAGGTTTATTCTTCATGCAAAGAAAACGGCTTTTGTCGTTGAGCATGATTTCATCATGGCAACATATCTTGCAGACAGAGTTATTGTTTATGAGGGCCAACCATCAATTGACTGTATTGCAAATACTCCGCAATCATTGTTGTCTGGGATGAACCTTTTCTTATCATTCTTTCACCAACACAACCTTGCATCTGTTTGA
Predicted protein sequences of Glyma.11g090900
>Glyma.11g090900.1.p sequence-type=predicted peptide transcript=Glyma.11g090900.1 locus=Glyma.11g090900 ID=Glyma.11g090900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTSSSKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDRDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKDEREKKEELCADLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQETAEEAQTYARYKYPTMSKTQGNFRLRVAEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTIEGGSEVEMPEFNVSYKPQKISPKFQSTVRHLLHQKIRDAYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIIAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSIDCIANTPQSLLSGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKSAGSYYYLDD*

>Glyma.11g090900.2.p sequence-type=predicted peptide transcript=Glyma.11g090900.2 locus=Glyma.11g090900 ID=Glyma.11g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTSSSKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDRDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKDEREKKEELCADLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQETAEEAQTYARYKYPTMSKTQGNFRLRVAEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTIEGGSEVEMPEFNVSYKPQKISPKFQSTVRHLLHQKIRDAYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIIAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSIDCIANTPQSLLSGMNLFLSFFHQHNLASV*






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