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Report for Sequence Feature Glyma.11g086200

Feature Type:gene_model
Chromosome:Gm11
Start:6484759
stop:6486170
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g086200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G23930.1AT probable small nuclear ribonucleoprotein G JGI N/AIEA
GO:0000387GO-bp spliceosomal snRNP assembly EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005682GO-cc U5 snRNP EnsemblGenomesN/AIEA
GO:0005685GO-cc U1 snRNP EnsemblGenomesN/AIEA
GO:0005686GO-cc U2 snRNP EnsemblGenomesN/AIEA
GO:0005687GO-cc U4 snRNP EnsemblGenomesN/AIEA
GO:0005689GO-cc U12-type spliceosomal complex EnsemblGenomesN/AIEA
GO:0034719GO-cc SMN-Sm protein complex EnsemblGenomesN/AIEA
GO:0043186GO-cc P granule EnsemblGenomesN/AIEA
GO:0071004GO-cc U2-type prespliceosome EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
GO:0097526GO-cc spliceosomal tri-snRNP complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG1780 KOG Small Nuclear ribonucleoprotein G JGI N/AIEA
PTHR10553Panther SMALL NUCLEAR RIBONUCLEOPROTEIN JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.11g086200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g086200 not represented in the dataset
Glyma.11g086200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g086200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g09150 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g086200
>Glyma.11g086200.1 sequence-type=CDS polypeptide=Glyma.11g086200.1.p locus=Glyma.11g086200 ID=Glyma.11g086200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAGTACATGGACAAGAAGCTTCAGATTAAACTGAATGGAAATCGCATGATTGTTGGCACTCTCCGTGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAACAGGGCCTGA
Predicted protein sequences of Glyma.11g086200
>Glyma.11g086200.1.p sequence-type=predicted peptide transcript=Glyma.11g086200.1 locus=Glyma.11g086200 ID=Glyma.11g086200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSRSGQPPDLKKYMDKKLQIKLNGNRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRA*






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