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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06540.1 | AT | Rab escort protein | JGI | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0007264 | GO-bp | small GTPase mediated signal transduction | EnsemblGenomes | N/A | IEA |
| GO:0018344 | GO-bp | protein geranylgeranylation | EnsemblGenomes | N/A | IEA |
| GO:0043547 | GO-bp | positive regulation of GTPase activity | EnsemblGenomes | N/A | IEA |
| GO:0050790 | GO-bp | regulation of catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005968 | GO-cc | Rab-protein geranylgeranyltransferase complex | EnsemblGenomes | N/A | IEA |
| GO:0005092 | GO-mf | GDP-dissociation inhibitor activity | EnsemblGenomes | N/A | IEA |
| GO:0005096 | GO-mf | GTPase activator activity | EnsemblGenomes | N/A | IEA |
| GO:0017137 | GO-mf | Rab GTPase binding | EnsemblGenomes | N/A | IEA |
| KOG4405 | KOG | GDP dissociation inhibitor | JGI | N/A | IEA |
| PTHR11787 | Panther | RAB GDP-DISSOCIATION INHIBITOR | JGI | N/A | IEA |
| PF00996 | PFAM | GDP dissociation inhibitor | JGI | N/A | IEA |
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Glyma.11g085700 not represented in the dataset |
Glyma.11g085700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g159000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g09100 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g085700.1 sequence-type=CDS polypeptide=Glyma.11g085700.1.p locus=Glyma.11g085700 ID=Glyma.11g085700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACCCAACCCCAAGATCCCTTCTCTTACCCTCCCATTGACCCAGTCAACTTCGATCTCATCATCGTCGGCACCGCCCTATCGGAATCCGTCATCGCCGCTGCCGCCTCCGCCGTCGGCAAAACCATCCTCCACCTCGACCCCAACTCCTTCTACGGCAGCCACTTCGCTTCTCTCTCCCTCCACGACCTCACTTCCTACCTCTCTTCCCCGCACTCCCTCCCCTCCGCCGCCGCCACAACCACTGACTCCGACGACGTCGTTGTCATCGACTTCGTCCAACAACCCCTCTGCTCCGACGCAGAAATCGCGACCTACGATGAATCCGCGTTTCTCAGCGAAAATTCGCGAAAATTCAGCATCGATTTGGGAGGTCCAAAGGCGCTGTTCTGCGCGGACAAGACGATCGATCTGTTGATGAAATCAGGCGCGGCGCAGTATTTGGAGTTCAAAGGAATCGACGAGAGCTTCGTCTACGAAGCTAACGCGGGTTTGGCGAACGTGCCGGATTCTCGAGGATCGATTTTCAGAGACAAGAAGCTTTCACTGAAAGAGAAGAACCAATTGATGAGGTTCTTCAAGCTGGTTCAGCAGCACCTGGATGATACTCAGGAGGAGAAGATTCCCGAGGAGGATTTGGAGATTGCGTTTGTTAGTTTCTTGGAGAAGATGAAGTTGCCGCCTAAGATAAAATCGATTCTTTTGTATGCTATAGCCATGCTAGATTATGACCAAGACAATAACGAGGTTTGTATAGAGTTACTTAAAACAAAAGACGGAATCGATTCTTTAGCTCTATACAGCTCATCTGTCGGAAGGTTTCCCAATGCTCCTGGGGCTTTGCTTTATCCTATTTATGGTGAGGGAGAACTACCACAAGCCTTTTGTCGCCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTAAGAATGTCGGTTGTTTCTCTGCTTATGGATAAGGTTACGGGGTCTTATAAAGGTGTTAGATTAGCTTCAGGTCAGGATTTATATAGCCACCAACTAATCCTGGACCCATCCTTCATGATTCCATCACCATTGTCTTCGTCTCCAAGAGATTTTCCCAGTGAAAAGCTCCAAATGTTGGGTCAGAGAGATATTAAAGGAATGGTGGCTAGGGGAATATGCATCACAAGGAGCTCAATAAAGCCAGATGTATCAAATTGCTCGGTGGTGTATCCTCCTAGATCTTTGTATCCTGAACAGTTGACATCAATCAAAGCTCTTCAGATAGGATCAAATCTTGCTGTTTGTCCTGCAGGAACCTTTATTTTATACTTTTCCACTATGTGCAATGATGCCGATGAAGGAAAGAAGCTACTAAAAGCAGCCATGAATGCTCTTCTTACACTGCCTGTATCTGGAAACTCTGAAAGTATTCCAAGTGTTCAAAGTGATAGTGAAGATATAAAACCCATTGTGCTCTGGAGTGCATTTTATATTCAGAAATTAATTATGTGTAAACTTGAATTTATCAGCTCCACTCCTACACCTGATGGAAATCTGAACTACGATGACCTTTTAGATGCCACCAGGAAGCTATTTAATCAGATGTACCCCGATGAAGAATTCTTTCCAAAGTCAACATCACCTGAAGATCCAACAGATGAGGATGATAATGGGTTAACTCTGGATAGCTAA
>Glyma.11g085700.1.p sequence-type=predicted peptide transcript=Glyma.11g085700.1 locus=Glyma.11g085700 ID=Glyma.11g085700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTQPQDPFSYPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLSSPHSLPSAAATTTDSDDVVVIDFVQQPLCSDAEIATYDESAFLSENSRKFSIDLGGPKALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGSIFRDKKLSLKEKNQLMRFFKLVQQHLDDTQEEKIPEEDLEIAFVSFLEKMKLPPKIKSILLYAIAMLDYDQDNNEVCIELLKTKDGIDSLALYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMSVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFMIPSPLSSSPRDFPSEKLQMLGQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQLTSIKALQIGSNLAVCPAGTFILYFSTMCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQSDSEDIKPIVLWSAFYIQKLIMCKLEFISSTPTPDGNLNYDDLLDATRKLFNQMYPDEEFFPKSTSPEDPTDEDDNGLTLDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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