Glyma.11g082800

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Report for Sequence Feature Glyma.11g082800

Feature Type:	gene_model
Chromosome:	Gm11
Start:	6221273
stop:	6229354
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g082800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49410.1	AT	Transcription factor IIIC, subunit 5	JGI	N/A	IEA
GO:0000127	GO-cc	transcription factor TFIIIC complex	EnsemblGenomes	N/A	IEA
GO:0001002	GO-mf	RNA polymerase III type 1 promoter sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
GO:0001003	GO-mf	RNA polymerase III type 2 promoter sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
KOG2473	KOG	RNA polymerase III transcription factor (TF)IIIC subunit	JGI	N/A	IEA
PTHR13230	Panther	GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5	JGI	N/A	IEA
PTHR13230:SF5	Panther	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 5	JGI	N/A	IEA
PF09734	PFAM	RNA polymerase III transcription factor (TF)IIIC subunit	JGI	N/A	IEA

Expression Patterns of Glyma.11g082800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g082800 not represented in the dataset	Glyma.11g082800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.11g082800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g08780	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g082800

Limit To All Plant Sequences

>Glyma.11g082800.2 sequence-type=transcript locus=Glyma.11g082800 ID=Glyma.11g082800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGGGTAGCAACCGCACACGGTGACAATCCTCTTTCCCTCCACTTTCATCTCTTAGCATTCCTCAAAGCAAGCTTTCCGTTTGTCCTCTGTCATCAGCAGTGGCTACCACCCATGGCTGACACAACGGTGGTGCACCACTTCTCATCACACCATCATGGTGGTGCGCTGCAATGATTATGCCACTACATGTTTTCCTTTCACCGTTGTGTAACTCTTGCTGCTTCTCTCATTCACCCATTCCACCCAATCTCCAAGTCTCCTTCCTTTGTTGTTCCTCTCTTAGGCAATAATTCATGCTCAGGCTCGCTGTTCCAAATCCAACAAATTAGAGCTTCGTTTCCGTCCTGAAGACCCCTATTCTCACCCTGCATTTGGGGAGCTTCGTCCCACCAACTCTCTGCTTCTCAAAATATCCAAGACAAAACCACCACCACCTGTTCATGATGCCGAAGCTTCTAGCAGCTCTACAAATGGGGAGCAAGACCAAGAGGGAAGTCTTTGTGCTGATATCGTCGCTCGTTTTCCCGAGGCTTATTTTTTTTATGGGATGGCGGACTACCAACATGTGATTCCAGTTCATGCTGATGTTGCCCGGAGGAAGAAGCGGAACTGGTCAGAGCTAGAAGAACTGCATTTTGATAAAGGTGGTTTCATGGATCTGGATCACGAGGATGTTATGATTATAGTGCCTCCAATTTTCGCTCCAAAAGATGTGCCAGAAAATTTAGTCTTAAGACCAGCTACCATGTCGAGTTCGAAAAAGAAACCAGAGGAAGTTGTACAACCCCATTTTGAGATGGACATGGAGCCAGTTCTTGCAATTGATTTTGACATTAAAGAGATTCCTAAGAAAGTGAATTGGGAGGAATACATACCCCAAGGCTCAGATCAGTGGGAGTTACAGATGGTTGTATCTAGAATGTTTGATGAGCGGCCTATATGGTCCAAAAATTCGCTTACCGAACTCTTGCTTGATAAGGGCTTAAGCTTTTCGCACAGCATGCTCAGAAGGCTTCTATCTAGAATTTCTTACTACTTTTCTAGTGGACCATTTCTGAGGTTTTGGATCAAGAAAGGATATGATCCACGCAAAGATCCTAATTCTCGAATTTATCAAAGAATTGATTATCGAGTACCTGTTCCATTACGAAGTTACTGTGATGCTCATTCAGCCAATAAATCAAAACATAGATGGAAGGATATATGTGCCTTTCGTGTTTTCCCTTACAAGTTCCAGACTTCTTTACAGTTTTTCGACCTTGTTGATGATTATATTCAATCAGAAATAAATAAGCCTCCTTTCCGACCAACTTGCACTTCTGGAACTGGGTGGTTCTCACAACACATGATCAATTGTATTAGACAACGTCTTATGGTGCGATATCTATCAGTATTCCCCAAGCCTGGTGCTGAGAATTTACTCAGAGCTGCCACTTTAAAGTTTGAAAAATTGAAGAGGGAGTGCTATAGGCATGCCATGAAGCTCGATGGAGAAGAATGCCAACAAGCTAATTTAGGTTTGGAAGAGAATGAAGAACTTGATAATGGTGAAGATGAAGAGGAGGCAGCTGAGGGTAATGATAGTGATGAAGAATGGGAAGAAGAGCATGATTTGGCTGGAGATAATGAAATGCCTCTGCCATCTGATTCCTACATCAACTTTGAGAATCTTTCAAGGACTCATTTACAGGATCTTTTTGTTAACTTCCCTCCTAATGAAATTGATTGTGACAATGTGCAAGCAAATGGCAGCGAAGAAGAATATCAAATATACGGGGAAGATAGTGAGGACAATTACTCTGATGAATGATTTCTGGCATTTGGAGTCATCAAATACACAGGAATGTCAATATTTGTAGAAGTTACATAGGAGGGTAGATATCATCTTTTAGATTTGTTGATTAAATATCATCATAGATCCTAGTATTCACTGTTACGTATAAGAACAAGTATCTCTAATTACATTAGAGAAACACGGGAGAAAAAAATAGTAGAAGTAGATGATGGAAAATAGAAGAGAAATGGACATGGTTGATTGAAGAAAACCGtttttcattttattttctatttttaatttttattttgtttttCAAGATGTCTGCCCAGAAGGATGAAAATAATTATTAGTAAATATGAGAA

Coding sequences of Glyma.11g082800

Limit To All Plant Sequences

>Glyma.11g082800.1 sequence-type=CDS polypeptide=Glyma.11g082800.1.p locus=Glyma.11g082800 ID=Glyma.11g082800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGTGATAAAGGATGGCACAATCTCAGGGGTTCTACCGGAACCTCAAGGATTTATGGTGCACTATCCTGCTTATCCATCATCCATCTCTCGAGCTGTTGATACTCTTGGGGGAATTCAAGCCATCCAGAAGGCTCGCTGTTCCAAATCCAACAAATTAGAGCTTCGTTTCCGTCCTGAAGACCCCTATTCTCACCCTGCATTTGGGGAGCTTCGTCCCACCAACTCTCTGCTTCTCAAAATATCCAAGACAAAACCACCACCACCTGTTCATGATGCCGAAGCTTCTAGCAGCTCTACAAATGGGGAGCAAGACCAAGAGGGAAGTCTTTGTGCTGATATCGTCGCTCGTTTTCCCGAGGCTTATTTTTTTTATGGGATGGCGGACTACCAACATGTGATTCCAGTTCATGCTGATGTTGCCCGGAGGAAGAAGCGGAACTGGTCAGAGCTAGAAGAACTGCATTTTGATAAAGGTGGTTTCATGGATCTGGATCACGAGGATGTTATGATTATAGTGCCTCCAATTTTCGCTCCAAAAGATGTGCCAGAAAATTTAGTCTTAAGACCAGCTACCATGTCGAGTTCGAAAAAGAAACCAGAGGAAGTTGTACAACCCCATTTTGAGATGGACATGGAGCCAGTTCTTGCAATTGATTTTGACATTAAAGAGATTCCTAAGAAAGTGAATTGGGAGGAATACATACCCCAAGGCTCAGATCAGTGGGAGTTACAGATGGTTGTATCTAGAATGTTTGATGAGCGGCCTATATGGTCCAAAAATTCGCTTACCGAACTCTTGCTTGATAAGGGCTTAAGCTTTTCGCACAGCATGCTCAGAAGGCTTCTATCTAGAATTTCTTACTACTTTTCTAGTGGACCATTTCTGAGGTTTTGGATCAAGAAAGGATATGATCCACGCAAAGATCCTAATTCTCGAATTTATCAAAGAATTGATTATCGAGTACCTGTTCCATTACGAAGTTACTGTGATGCTCATTCAGCCAATAAATCAAAACATAGATGGAAGGATATATGTGCCTTTCGTGTTTTCCCTTACAAGTTCCAGACTTCTTTACAGTTTTTCGACCTTGTTGATGATTATATTCAATCAGAAATAAATAAGCCTCCTTTCCGACCAACTTGCACTTCTGGAACTGGGTGGTTCTCACAACACATGATCAATTGTATTAGACAACGTCTTATGGTGCGATATCTATCAGTATTCCCCAAGCCTGGTGCTGAGAATTTACTCAGAGCTGCCACTTTAAAGTTTGAAAAATTGAAGAGGGAGTGCTATAGGCATGCCATGAAGCTCGATGGAGAAGAATGCCAACAAGCTAATTTAGGTTTGGAAGAGAATGAAGAACTTGATAATGGTGAAGATGAAGAGGAGGCAGCTGAGGGTAATGATAGTGATGAAGAATGGGAAGAAGAGCATGATTTGGCTGGAGATAATGAAATGCCTCTGCCATCTGATTCCTACATCAACTTTGAGAATCTTTCAAGGACTCATTTACAGGATCTTTTTGTTAACTTCCCTCCTAATGAAATTGATTGTGACAATGTGCAAGCAAATGGCAGCGAAGAAGAATATCAAATATACGGGGAAGATAGTGAGGACAATTACTCTGATGAATGA

>Glyma.11g082800.2 sequence-type=CDS polypeptide=Glyma.11g082800.2.p locus=Glyma.11g082800 ID=Glyma.11g082800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGACTACCAACATGTGATTCCAGTTCATGCTGATGTTGCCCGGAGGAAGAAGCGGAACTGGTCAGAGCTAGAAGAACTGCATTTTGATAAAGGTGGTTTCATGGATCTGGATCACGAGGATGTTATGATTATAGTGCCTCCAATTTTCGCTCCAAAAGATGTGCCAGAAAATTTAGTCTTAAGACCAGCTACCATGTCGAGTTCGAAAAAGAAACCAGAGGAAGTTGTACAACCCCATTTTGAGATGGACATGGAGCCAGTTCTTGCAATTGATTTTGACATTAAAGAGATTCCTAAGAAAGTGAATTGGGAGGAATACATACCCCAAGGCTCAGATCAGTGGGAGTTACAGATGGTTGTATCTAGAATGTTTGATGAGCGGCCTATATGGTCCAAAAATTCGCTTACCGAACTCTTGCTTGATAAGGGCTTAAGCTTTTCGCACAGCATGCTCAGAAGGCTTCTATCTAGAATTTCTTACTACTTTTCTAGTGGACCATTTCTGAGGTTTTGGATCAAGAAAGGATATGATCCACGCAAAGATCCTAATTCTCGAATTTATCAAAGAATTGATTATCGAGTACCTGTTCCATTACGAAGTTACTGTGATGCTCATTCAGCCAATAAATCAAAACATAGATGGAAGGATATATGTGCCTTTCGTGTTTTCCCTTACAAGTTCCAGACTTCTTTACAGTTTTTCGACCTTGTTGATGATTATATTCAATCAGAAATAAATAAGCCTCCTTTCCGACCAACTTGCACTTCTGGAACTGGGTGGTTCTCACAACACATGATCAATTGTATTAGACAACGTCTTATGGTGCGATATCTATCAGTATTCCCCAAGCCTGGTGCTGAGAATTTACTCAGAGCTGCCACTTTAAAGTTTGAAAAATTGAAGAGGGAGTGCTATAGGCATGCCATGAAGCTCGATGGAGAAGAATGCCAACAAGCTAATTTAGGTTTGGAAGAGAATGAAGAACTTGATAATGGTGAAGATGAAGAGGAGGCAGCTGAGGGTAATGATAGTGATGAAGAATGGGAAGAAGAGCATGATTTGGCTGGAGATAATGAAATGCCTCTGCCATCTGATTCCTACATCAACTTTGAGAATCTTTCAAGGACTCATTTACAGGATCTTTTTGTTAACTTCCCTCCTAATGAAATTGATTGTGACAATGTGCAAGCAAATGGCAGCGAAGAAGAATATCAAATATACGGGGAAGATAGTGAGGACAATTACTCTGATGAATGA

Predicted protein sequences of Glyma.11g082800

Limit To All Plant Sequences

>Glyma.11g082800.1.p sequence-type=predicted peptide transcript=Glyma.11g082800.1 locus=Glyma.11g082800 ID=Glyma.11g082800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVIKDGTISGVLPEPQGFMVHYPAYPSSISRAVDTLGGIQAIQKARCSKSNKLELRFRPEDPYSHPAFGELRPTNSLLLKISKTKPPPPVHDAEASSSSTNGEQDQEGSLCADIVARFPEAYFFYGMADYQHVIPVHADVARRKKRNWSELEELHFDKGGFMDLDHEDVMIIVPPIFAPKDVPENLVLRPATMSSSKKKPEEVVQPHFEMDMEPVLAIDFDIKEIPKKVNWEEYIPQGSDQWELQMVVSRMFDERPIWSKNSLTELLLDKGLSFSHSMLRRLLSRISYYFSSGPFLRFWIKKGYDPRKDPNSRIYQRIDYRVPVPLRSYCDAHSANKSKHRWKDICAFRVFPYKFQTSLQFFDLVDDYIQSEINKPPFRPTCTSGTGWFSQHMINCIRQRLMVRYLSVFPKPGAENLLRAATLKFEKLKRECYRHAMKLDGEECQQANLGLEENEELDNGEDEEEAAEGNDSDEEWEEEHDLAGDNEMPLPSDSYINFENLSRTHLQDLFVNFPPNEIDCDNVQANGSEEEYQIYGEDSEDNYSDE*

>Glyma.11g082800.2.p sequence-type=predicted peptide transcript=Glyma.11g082800.2 locus=Glyma.11g082800 ID=Glyma.11g082800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADYQHVIPVHADVARRKKRNWSELEELHFDKGGFMDLDHEDVMIIVPPIFAPKDVPENLVLRPATMSSSKKKPEEVVQPHFEMDMEPVLAIDFDIKEIPKKVNWEEYIPQGSDQWELQMVVSRMFDERPIWSKNSLTELLLDKGLSFSHSMLRRLLSRISYYFSSGPFLRFWIKKGYDPRKDPNSRIYQRIDYRVPVPLRSYCDAHSANKSKHRWKDICAFRVFPYKFQTSLQFFDLVDDYIQSEINKPPFRPTCTSGTGWFSQHMINCIRQRLMVRYLSVFPKPGAENLLRAATLKFEKLKRECYRHAMKLDGEECQQANLGLEENEELDNGEDEEEAAEGNDSDEEWEEEHDLAGDNEMPLPSDSYINFENLSRTHLQDLFVNFPPNEIDCDNVQANGSEEEYQIYGEDSEDNYSDE*

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