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Report for Sequence Feature Glyma.11g080000

Feature Type:gene_model
Chromosome:Gm11
Start:6005401
stop:6006947
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g080000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35900.1AT Basic-leucine zipper (bZIP) transcription factor family protein JGI N/AIEA

Proteins Associated with Glyma.11g080000
LocusGene SymbolProtein Name
FDa2 Flowering Locus D

Expression Patterns of Glyma.11g080000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g080000 not represented in the dataset
Glyma.11g080000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g080000
ParalogEvidenceComments
Glyma.01g163500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g080000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.11g080000
>Glyma.11g080000.1 sequence-type=CDS polypeptide=Glyma.11g080000.1.p locus=Glyma.11g080000 ID=Glyma.11g080000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAGGTGTGGAAAGACATAAACGTGTTTCAAGACTTGACCACCATAGACTCACCAAACATCATACTTTCCTCTGCTTCTTCAGAAACTGGTTTCTCTCTCCCTCACTTCCATTTCCAATCTCAGCCCTCCTCCCAACACCCTCCACCCTCCAACAAAACTTCTGCTCAACCTCCTGCTGCCGACAGAAGAAATAAGCGCATGATCAAGAATCGCGAGTCCGCCGCTTACACGAATGAACTGGAGCTTGAAGTGGAGCACTTAAAGGAAGAGAATGCAAGGCTCAAAAGACAGCAACAACAGTTGTGTGAAGCCGCATCCAGTGAGCAAAAGAAGAAGGGCACCACCCTATATCGAGCATCTACGGCTCCATTTTGA
Predicted protein sequences of Glyma.11g080000
>Glyma.11g080000.1.p sequence-type=predicted peptide transcript=Glyma.11g080000.1 locus=Glyma.11g080000 ID=Glyma.11g080000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEVWKDINVFQDLTTIDSPNIILSSASSETGFSLPHFHFQSQPSSQHPPPSNKTSAQPPAADRRNKRMIKNRESAAYTNELELEVEHLKEENARLKRQQQQLCEAASSEQKKKGTTLYRASTAPF*






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