Glyma.11g079000

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Report for Sequence Feature Glyma.11g079000

Feature Type:	gene_model
Chromosome:	Gm11
Start:	5937276
stop:	5941473
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g079000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80560.1	AT	isopropylmalate dehydrogenase 2	JGI	N/A	IEA
GO:0009082	GO-bp	branched-chain amino acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009098	GO-bp	leucine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0009570	GO-cc	chloroplast stroma	EnsemblGenomes	N/A	IEA
GO:0000287	GO-mf	magnesium ion binding	EnsemblGenomes	N/A	IEA
GO:0003862	GO-mf	3-isopropylmalate dehydrogenase activity	EnsemblGenomes	N/A	IEA
GO:0016616	GO-mf	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	EnsemblGenomes	N/A	IEA
GO:0016616	GO-mf	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0051287	GO-mf	NAD binding	EnsemblGenomes	N/A	IEA
KOG0786	KOG	3-isopropylmalate dehydrogenase	JGI	N/A	IEA
PTHR11835	Panther	DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE	JGI	N/A	IEA
PTHR11835:SF13	Panther		JGI	N/A	IEA
PF00180	PFAM	Isocitrate/isopropylmalate dehydrogenase	JGI	N/A	IEA
BRANCHED-CHAIN-AA-SYN-PWY	SoyCyc9	superpathway of branched chain amino acid biosynthesis	Plant Metabolic Network		ISS
LEUSYN-PWY	SoyCyc9	L-leucine biosynthesis	Plant Metabolic Network		ISS
GN7V-61498	SoyCyc9-rxn	3-isopropylmalate dehydrogenase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.11g079000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g079000 not represented in the dataset	Glyma.11g079000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.11g079000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g08370	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g079000

Limit To All Plant Sequences

>Glyma.11g079000.2 sequence-type=transcript locus=Glyma.11g079000 ID=Glyma.11g079000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAAACCAGGTTAAATATAACTTTACCAAAATAGAGGGAAAGAAAGATACAAGTTGAGCGAGTGAGTCACAGTTGTTCTCATCGAAGCAGAAGAAGAAGAAATGGCGACTTCTCTGCAACTGTTCCAATGCAAACTAGCGAGACCCTTTCGGCCATTCCCTTTGCGAAGGTCAACTCCCCCTCTGAGTCTGAGGTGTTGCGCTTCGCCCCCTTCTTCCTACAGCATCACTCTCATTCCCGGCGATGGAATCGGCCCCGAAATCATCTCCGTGGCCAAAGACGTTCTTGTCCTCGTGGGTTCTCTCGAAGGGATCAAATTCGAGTTCCAAGAGGTTCTTATGGGTGGAGCTGCATTGGATGCCACCGGAGTCCCTTTACCCGATGATACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTGCTTGGTGCTGTTGGAGGTTATAAATGGGATAAGAACGAGAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCAGCTACCGTGTACTCTCCGTTAGTGGATGCTTCAACTTTGAAGAGAGAGGTTGCTGAAGGGGTCGATATCATGCTTATAAGGGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGAAAATGGTGAAGAGATTGGCTTTAATACTGAGATTTACGCTACACATGAGATAGATCGCATAGCTCACTTTGCATTTAAGGTTGCTCAGAAGCGTTGTGGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGAAAGAGATTTTTGGCAATAGCGCAAGAATATCCTGATGTTGAGCTCTCACATATGTATGTCGATAATGCTTCAATGCAACTAATTCGCGATCCAAAACAGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCCGGACAGGACAAGGCAAATCCATTTGCTACTGTTCTTAGTGCTGCTATGCTTTTGAGGTATGGCCTAGGAGAAGAAAAGGCAGCTAAAAGAATAGAGAATGCAGTGGTGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCAGGAACAAAGCTGGTAGGATGCAAACAGTTAGGTGAAGAGATACTGAAGTCAGTTGAATCTAACGTTCATGCTGGTGCTGCTACAGTGTGATCTCGAGACCAACTCGCCATAGAACTTTGGATTCTGGTTTTTATCCTAGAGATCACTACGACTGCCAAAGCTGAGAAAATCTCCCTAATTTGGCTCCCTTCGTGTTTCCACTTTCTTCTTTTACTAATTTTACTGGCTAAGACAAGCATTTTTTTTAAATACCTTTTAGTATATCTGGATTAATATTTTAAAAGTATTGAAAATTGTAGTTGGCCGTTAAACAAGGTTAAGTGAGGTACCACGGCGATTCAATAAGGGTGGGAGAAAACTCTCTCATTCAAATGAGGACTTTGCCTATACATGATAAGCACAAACACCAAGCAAAAAGGTTTTTTCTAGTAATGACAATGAAATTGAGAATCCTGAAGATCTTCTTTTTGAGTATGTGGTACAGGATCTTATAGTTGTGAATCATTGGCAAACAAGATATTAGATCTTGCACACCACTATCCAACACTTGTCATTGAGAAGTTGTGACTTATTGTCAGTCAATTGGAAATTTGTGACATGGTATCAAATTGTAACTTCCAAGTTTTGAGTGAAAGGAAAATCTCTTATTCTCGTACCTTCCACATGCATGAGTTATGAAAGAAAATAATTTATAAGTC

>Glyma.11g079000.3 sequence-type=transcript locus=Glyma.11g079000 ID=Glyma.11g079000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAAACCAGGTTAAATATAACTTTACCAAAATAGAGGGAAAGAAAGATACAAGTTGAGCGAGTGAGTCACAGTTGTTCTCATCGAAGCAGAAGAAGAAGAAATGGCGACTTCTCTGCAACTGTTCCAATGCAAACTAGCGAGACCCTTTCGGCCATTCCCTTTGCGAAGGTCAACTCCCCCTCTGAGTCTGAGGTGTTGCGCTTCGCCCCCTTCTTCCTACAGCATCACTCTCATTCCCGGCGATGGAATCGGCCCCGAAATCATCTCCGTGGCCAAAGACGTTCTTGTCCTCGTGGGTTCTCTCGAAGGGATCAAATTCGAGTTCCAAGAGGTTCTTATGGGTGGAGCTGCATTGGATGCCACCGGAGTCCCTTTACCCGATGATACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTGCTTGGTGCTGTTGGAGGTTATAAATGGGATAAGAACGAGAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCAGCTACCGTGTACTCTCCGTTAGTGGATGCTTCAACTTTGAAGAGAGAGGTTGCTGAAGGGGTCGATATCATGCTTATAAGGGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGAAAATGGTGAAGAGATTGGCTTTAATACTGAGATTTACGCTACACATGAGATAGATCGCATAGCTCACTTTGCATTTAAGGTTGCTCAGAAGCGTTGTGGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGAAAGAGATTTTTGGCAATAGCGCAAGAATATCCTGATGTTGAGCTCTCACATATGTATGTCGATAATGCTTCAATGCAACTAATTCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTAGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCCGGACAGGACAAGGCAAATCCATTTGCTACTGTTCTTAGTGCTGCTATGCTTTTGAGGTATGGCCTAGGAGAAGAAAAGGCAGCTAAAAGAATAGAGAATGCAGTGGTGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCAGGAACACTGGTAGGATGCAAACAGTTAGGTGAAGAGATACTGAAGTCAGTTGAATCTAACGTTCATGCTGGTGCTGCTACAGTGTGATCTCGAGACCAACTCGCCATAGAACTTTGGATTCTGGTTTTTATCCTAGAGATCACTACGACTGCCAAAGCTGAGAAAATCTCCCTAATTTGGCTCCCTTCGTGTTTCCACTTTCTTCTTTTACTAATTTTACTGGCTAAGACAAGCATTTTTTTTAAATACCTTTTAGTATATCTGGATTAATATTTTAAAAGTATTGAAAATTGTAGTTGGCCGTTAAACAAGGTTAAGTGAGGTACCACGGCGATTCAATAAGGGTGGGAGAAAACTCTCTCATTCAAATGAGGACTTTGCCTATACATGATAAGCACAAACACCAAGCAAAAAGGTTTTTTCTAGTAATGACAATGAAATTGAGAATCCTGAAGATCTTCTTTTTGAGTATGTGGTACAGGATCTTATAGTTGTGAATCATTGGCAAACAAGATATTAGATCTTGCACACCACTATCCAACACTTGTCATTGAGAAGTTGTGACTTATTGTCAGTCAATTGGAAATTTGTGACATGGTATCAAATTGTAACTTCCAAGTTTTGAGTGAAAGGAAAATCTCTTATTCTCGTACCTTCCACATGCATGAGTTATGAAAGAAAATAATTTATAAGTC

Coding sequences of Glyma.11g079000

Limit To All Plant Sequences

>Glyma.11g079000.1 sequence-type=CDS polypeptide=Glyma.11g079000.1.p locus=Glyma.11g079000 ID=Glyma.11g079000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACTTCTCTGCAACTGTTCCAATGCAAACTAGCGAGACCCTTTCGGCCATTCCCTTTGCGAAGGTCAACTCCCCCTCTGAGTCTGAGGTGTTGCGCTTCGCCCCCTTCTTCCTACAGCATCACTCTCATTCCCGGCGATGGAATCGGCCCCGAAATCATCTCCGTGGCCAAAGACGTTCTTGTCCTCGTGGGTTCTCTCGAAGGGATCAAATTCGAGTTCCAAGAGGTTCTTATGGGTGGAGCTGCATTGGATGCCACCGGAGTCCCTTTACCCGATGATACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTGCTTGGTGCTGTTGGAGGTTATAAATGGGATAAGAACGAGAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCAGCTACCGTGTACTCTCCGTTAGTGGATGCTTCAACTTTGAAGAGAGAGGTTGCTGAAGGGGTCGATATCATGCTTATAAGGGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGAAAATGGTGAAGAGATTGGCTTTAATACTGAGATTTACGCTACACATGAGATAGATCGCATAGCTCACTTTGCATTTAAGGTTGCTCAGAAGCGTTGTGGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGAAAGAGATTTTTGGCAATAGCGCAAGAATATCCTGATGTTGAGCTCTCACATATGTATGTCGATAATGCTTCAATGCAACTAATTCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTAGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCCGGACAGGACAAGGCAAATCCATTTGCTACTGTTCTTAGTGCTGCTATGCTTTTGAGGTATGGCCTAGGAGAAGAAAAGGCAGCTAAAAGAATAGAGAATGCAGTGGTGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCAGGAACAAAGCTGGTAGGATGCAAACAGTTAGGTGAAGAGATACTGAAGTCAGTTGAATCTAACGTTCATGCTGGTGCTGCTACAGTGTGA

>Glyma.11g079000.2 sequence-type=CDS polypeptide=Glyma.11g079000.2.p locus=Glyma.11g079000 ID=Glyma.11g079000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACTTCTCTGCAACTGTTCCAATGCAAACTAGCGAGACCCTTTCGGCCATTCCCTTTGCGAAGGTCAACTCCCCCTCTGAGTCTGAGGTGTTGCGCTTCGCCCCCTTCTTCCTACAGCATCACTCTCATTCCCGGCGATGGAATCGGCCCCGAAATCATCTCCGTGGCCAAAGACGTTCTTGTCCTCGTGGGTTCTCTCGAAGGGATCAAATTCGAGTTCCAAGAGGTTCTTATGGGTGGAGCTGCATTGGATGCCACCGGAGTCCCTTTACCCGATGATACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTGCTTGGTGCTGTTGGAGGTTATAAATGGGATAAGAACGAGAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCAGCTACCGTGTACTCTCCGTTAGTGGATGCTTCAACTTTGAAGAGAGAGGTTGCTGAAGGGGTCGATATCATGCTTATAAGGGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGAAAATGGTGAAGAGATTGGCTTTAATACTGAGATTTACGCTACACATGAGATAGATCGCATAGCTCACTTTGCATTTAAGGTTGCTCAGAAGCGTTGTGGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGAAAGAGATTTTTGGCAATAGCGCAAGAATATCCTGATGTTGAGCTCTCACATATGTATGTCGATAATGCTTCAATGCAACTAATTCGCGATCCAAAACAGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCCGGACAGGACAAGGCAAATCCATTTGCTACTGTTCTTAGTGCTGCTATGCTTTTGAGGTATGGCCTAGGAGAAGAAAAGGCAGCTAAAAGAATAGAGAATGCAGTGGTGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCAGGAACAAAGCTGGTAGGATGCAAACAGTTAGGTGAAGAGATACTGAAGTCAGTTGAATCTAACGTTCATGCTGGTGCTGCTACAGTGTGA

>Glyma.11g079000.3 sequence-type=CDS polypeptide=Glyma.11g079000.3.p locus=Glyma.11g079000 ID=Glyma.11g079000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACTTCTCTGCAACTGTTCCAATGCAAACTAGCGAGACCCTTTCGGCCATTCCCTTTGCGAAGGTCAACTCCCCCTCTGAGTCTGAGGTGTTGCGCTTCGCCCCCTTCTTCCTACAGCATCACTCTCATTCCCGGCGATGGAATCGGCCCCGAAATCATCTCCGTGGCCAAAGACGTTCTTGTCCTCGTGGGTTCTCTCGAAGGGATCAAATTCGAGTTCCAAGAGGTTCTTATGGGTGGAGCTGCATTGGATGCCACCGGAGTCCCTTTACCCGATGATACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTGCTTGGTGCTGTTGGAGGTTATAAATGGGATAAGAACGAGAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCAGCTACCGTGTACTCTCCGTTAGTGGATGCTTCAACTTTGAAGAGAGAGGTTGCTGAAGGGGTCGATATCATGCTTATAAGGGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGAAAATGGTGAAGAGATTGGCTTTAATACTGAGATTTACGCTACACATGAGATAGATCGCATAGCTCACTTTGCATTTAAGGTTGCTCAGAAGCGTTGTGGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGAAAGAGATTTTTGGCAATAGCGCAAGAATATCCTGATGTTGAGCTCTCACATATGTATGTCGATAATGCTTCAATGCAACTAATTCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTAGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCCGGACAGGACAAGGCAAATCCATTTGCTACTGTTCTTAGTGCTGCTATGCTTTTGAGGTATGGCCTAGGAGAAGAAAAGGCAGCTAAAAGAATAGAGAATGCAGTGGTGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCAGGAACACTGGTAGGATGCAAACAGTTAGGTGAAGAGATACTGAAGTCAGTTGAATCTAACGTTCATGCTGGTGCTGCTACAGTGTGA

Predicted protein sequences of Glyma.11g079000

Limit To All Plant Sequences

>Glyma.11g079000.1.p sequence-type=predicted peptide transcript=Glyma.11g079000.1 locus=Glyma.11g079000 ID=Glyma.11g079000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATSLQLFQCKLARPFRPFPLRRSTPPLSLRCCASPPSSYSITLIPGDGIGPEIISVAKDVLVLVGSLEGIKFEFQEVLMGGAALDATGVPLPDDTLSAAKQSHAVLLGAVGGYKWDKNEKHLKPETGLLQIRKELGVFANLRPATVYSPLVDASTLKREVAEGVDIMLIRELTGGIYFGEPRGFGTNENGEEIGFNTEIYATHEIDRIAHFAFKVAQKRCGKLCSVDKANVLEASMLWRKRFLAIAQEYPDVELSHMYVDNASMQLIRDPKQFDTMVTNNIFGDILSDEASMVTGSIGMLPSASLGASGPGLFEPIHGSAPDIAGQDKANPFATVLSAAMLLRYGLGEEKAAKRIENAVVDTLNRGFRTGDIYSAGTKLVGCKQLGEEILKSVESNVHAGAATV*

>Glyma.11g079000.2.p sequence-type=predicted peptide transcript=Glyma.11g079000.2 locus=Glyma.11g079000 ID=Glyma.11g079000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATSLQLFQCKLARPFRPFPLRRSTPPLSLRCCASPPSSYSITLIPGDGIGPEIISVAKDVLVLVGSLEGIKFEFQEVLMGGAALDATGVPLPDDTLSAAKQSHAVLLGAVGGYKWDKNEKHLKPETGLLQIRKELGVFANLRPATVYSPLVDASTLKREVAEGVDIMLIRELTGGIYFGEPRGFGTNENGEEIGFNTEIYATHEIDRIAHFAFKVAQKRCGKLCSVDKANVLEASMLWRKRFLAIAQEYPDVELSHMYVDNASMQLIRDPKQGPGLFEPIHGSAPDIAGQDKANPFATVLSAAMLLRYGLGEEKAAKRIENAVVDTLNRGFRTGDIYSAGTKLVGCKQLGEEILKSVESNVHAGAATV*

>Glyma.11g079000.3.p sequence-type=predicted peptide transcript=Glyma.11g079000.3 locus=Glyma.11g079000 ID=Glyma.11g079000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATSLQLFQCKLARPFRPFPLRRSTPPLSLRCCASPPSSYSITLIPGDGIGPEIISVAKDVLVLVGSLEGIKFEFQEVLMGGAALDATGVPLPDDTLSAAKQSHAVLLGAVGGYKWDKNEKHLKPETGLLQIRKELGVFANLRPATVYSPLVDASTLKREVAEGVDIMLIRELTGGIYFGEPRGFGTNENGEEIGFNTEIYATHEIDRIAHFAFKVAQKRCGKLCSVDKANVLEASMLWRKRFLAIAQEYPDVELSHMYVDNASMQLIRDPKQFDTMVTNNIFGDILSDEASMVTGSIGMLPSASLGASGPGLFEPIHGSAPDIAGQDKANPFATVLSAAMLLRYGLGEEKAAKRIENAVVDTLNRGFRTGDIYSAGTLVGCKQLGEEILKSVESNVHAGAATV*

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