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Report for Sequence Feature Glyma.11g076000

Feature Type:gene_model
Chromosome:Gm11
Start:5688314
stop:5689998
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g076000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36130.1AT Ribosomal protein L2 family JGI N/AIEA
GO:0002181GO-bp cytoplasmic translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0015934GO-cc large ribosomal subunit EnsemblGenomesN/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG2309 KOG 60s ribosomal protein L2/L8 JGI N/AIEA
PTHR13691Panther RIBOSOMAL PROTEIN L2 JGI N/AIEA
PTHR13691:SF4Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00181PFAM Ribosomal Proteins L2, RNA binding domain JGI N/AIEA
PF03947PFAM Ribosomal Proteins L2, C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.11g076000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g076000 not represented in the dataset
Glyma.11g076000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g076000
ParalogEvidenceComments
Glyma.01g167300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g076000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g08050 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g076000
>Glyma.11g076000.1 sequence-type=CDS polypeptide=Glyma.11g076000.1.p locus=Glyma.11g076000 ID=Glyma.11g076000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGGTGATTCGCGCACAGCGTAAGGGTGCGGGGTCGGTGTTCAAGTCCCACACCCACCACCGCAAGGGTCCGGCGAGGTTCCGCAGCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAAGGGGTCGTCACCGATATCATCCACGACCCTGGTCGCGGTGCTCCTCTAGCCAAGGTGGCGTTCCGCCACCCCTTCCGCTACAAGAAGCAGATGGAGCTCTTCGTCGCCGCCGAGGGCCTCTACACCGGCCAGTTCATCTACTGCGGCAAGAAGGCCACCCTCGTCGTCGGCAACGTCTTGCCCCTCCGATCCATCCCCGAAGGTGCCGTTATCTGCAACGTCGAGCACCACGTTGGCGACCGCGGCGTCTTCGCCAGAGCCTCCGGTGACTATGCCATTGTTATCAGCCACAACCCTGATAACGACACCTCTAGGATCAAGCTTCCTTCTGGGTCAAAGAAGATTGTGCCTAGTGGGTGCAGGGCGATGATTGGGCAGGTTGCAGGTGGAGGGAGGACTGAGAAGCCTCTTCTGAAAGCTGGTAATGCTTATCACAAATTCAGAGTGAAGAGGAATTGCTGGCCTAAGGTGCGTGGTGTGGCGATGAACCCAGTTGAGCATCCTCATGGAGGAGGTAATCACCAGCATATTGGTCATGCCAGTACCGTCAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTTAGGGGGCAAGCTGCTGCTACTGCTGCTAAAGCGGATAAGACCACCTGA
Predicted protein sequences of Glyma.11g076000
>Glyma.11g076000.1.p sequence-type=predicted peptide transcript=Glyma.11g076000.1 locus=Glyma.11g076000 ID=Glyma.11g076000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVAFRHPFRYKKQMELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKTT*






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