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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66570.1 | AT | PS II oxygen-evolving complex 1 | JGI | N/A | IEA |
| GO:0010207 | GO-bp | photosystem II assembly | EnsemblGenomes | N/A | IEA |
| GO:0015979 | GO-bp | photosynthesis | EnsemblGenomes | N/A | IEA |
| GO:0015979 | GO-bp | photosynthesis | JGI | N/A | IEA |
| GO:0042549 | GO-bp | photosystem II stabilization | EnsemblGenomes | N/A | IEA |
| GO:0042549 | GO-bp | photosystem II stabilization | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0009523 | GO-cc | photosystem II | EnsemblGenomes | N/A | IEA |
| GO:0009523 | GO-cc | photosystem II | JGI | N/A | IEA |
| GO:0009654 | GO-cc | photosystem II oxygen evolving complex | EnsemblGenomes | N/A | IEA |
| GO:0009654 | GO-cc | photosystem II oxygen evolving complex | JGI | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0019898 | GO-cc | extrinsic component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0019898 | GO-cc | extrinsic component of membrane | JGI | N/A | IEA |
| GO:0005509 | GO-mf | calcium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005509 | GO-mf | calcium ion binding | JGI | N/A | IEA |
| GO:0010242 | GO-mf | oxygen evolving activity | EnsemblGenomes | N/A | IEA |
| PF01716 | PFAM | Manganese-stabilising protein / photosystem II polypeptide | JGI | N/A | IEA |
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Glyma.11g061300 not represented in the dataset |
Glyma.11g061300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g180800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g06510 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g061300.1 sequence-type=CDS polypeptide=Glyma.11g061300.1.p locus=Glyma.11g061300 ID=Glyma.11g061300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGCCTCACTACAAGCTGCAGCTACCTTCATGCAACCCACCAAGGTTGGCATAGCCTCTCGCAACCTCAAATCTACACAATGCATTTCTAAGGCTTTTGGCTTGGAACCTGCTGCAGCTAAACTCACTTGCTCCCTTCAGCCTGATCTCAAAGAATTTGCTCAAAAATGTGTCGACGCTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCTCTCGTTGTTTCTGGAGCAAGTGCAGAAGGTGTTCCAAAAAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAACCAGTGCCCAACCATTGAAGGTGGAGTGGACTCATTCGCCTTCAAGCCAGGGAAATACAACGCCCAGAAGTTGTGCCTGGAACCAACTTCCTTCACGGTGAAGGCAGAGGGCGTGGCCAAGAACGCCCCACCCGAATTCCAGAACACCAAGCTCATGACTCGTCTCACCTACACCCTGGACGAGATTGAGGGTCCCTTCGAGGTTACATCCGATGGAACCGTGAAATTCGAGGAGAAAGACGGAATTGACTATGCTGCTGTCACTGTTCAGCTTCCCGGGGGAGAGCGTGTGCCATTCCTCTTTACCATTAAGCAGTTGGTGGCATCTGGGAAACCAGACAGCTTCAGTGGGGAGTTCCTAGTGCCTTCTTACCGTGGTTCCTCTTTCTTGGACCCCAAGGGAAGGGGTGCCTCAACTGGTTATGACAATGCTGTTGCTTTGCCTGCTGGTGGCAGAGGAGATGAAGAGGAACTTGCTAAAGAAAACAACAAGAGTGCTTCTTCTTCCAAGGGCAAAATCACCTTGAGTGTCACCAAGACCAAGCCTGAGACTGGTGAGGTTATTGGGGTCTTCGAGAGTGTTCAGCCTTCTGATACTGATTTGGGGGCTAAAGCTCCTAAGGATGTTAAGATCCAAGGCATCTGGTATGCTCAGCTTGACTCATAG
>Glyma.11g061300.1.p sequence-type=predicted peptide transcript=Glyma.11g061300.1 locus=Glyma.11g061300 ID=Glyma.11g061300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASLQAAATFMQPTKVGIASRNLKSTQCISKAFGLEPAAAKLTCSLQPDLKEFAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTFDEIQSKTYLEVKGTGTANQCPTIEGGVDSFAFKPGKYNAQKLCLEPTSFTVKAEGVAKNAPPEFQNTKLMTRLTYTLDEIEGPFEVTSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELAKENNKSASSSKGKITLSVTKTKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGIWYAQLDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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