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Report for Sequence Feature Glyma.11g056700

Feature Type:gene_model
Chromosome:Gm11
Start:4282555
stop:4284383
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g056700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49620.1AT Cyclin-dependent kinase inhibitor family protein JGI N/AIEA
GO:0006469GO-bp negative regulation of protein kinase activity EnsemblGenomesN/AIEA
GO:0007050GO-bp cell cycle arrest EnsemblGenomesN/AIEA
GO:0007050GO-bp cell cycle arrest JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0071901GO-bp negative regulation of protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0004860GO-mf protein kinase inhibitor activity EnsemblGenomesN/AIEA
GO:0004861GO-mf cyclin-dependent protein serine/threonine kinase inhibitor activity EnsemblGenomesN/AIEA
GO:0004861GO-mf cyclin-dependent protein serine/threonine kinase inhibitor activity JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
PTHR10265Panther CYCLIN-DEPENDENT KINASE INHIBITOR 1 JGI N/AIEA
PF02234PFAM Cyclin-dependent kinase inhibitor JGI N/AIEA

Expression Patterns of Glyma.11g056700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g056700 not represented in the dataset
Glyma.11g056700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g056700
ParalogEvidenceComments
Glyma.01g185400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g056700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g06050 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g056700
>Glyma.11g056700.1 sequence-type=CDS polypeptide=Glyma.11g056700.1.p locus=Glyma.11g056700 ID=Glyma.11g056700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGCTCAGGTCGGTGTCAGGACACGAGCCCAAGCCGCATTAGCCATGGAAGCTGTTAGTTCTGCTGAACCATCATCCAAGAGAAAGAAGATCAGCAACAGTACTAACCAAGAGCCAAAACTCTCCAAGACTCCGAGAACGAGTTCTTCCTCCGCTGTCAAACCAGCGACGGTGACGGAGATGGTTCAGCCGGTGTCGCCGGAGATGGTTCAGCAACGCTGCCTGAGCCCTACCTCCAGTGAAATTCCGGCGTCTTGCTGCTCCAGCAACGGATCCATTGGCCTCGATCAGGACAGGATCAAGCTCTTAGATCTGGAGGTGGAGAGCGCGCAAGTTGAAACGTCGACGTGCAATGGTGGTCATGAAATTGAGAGGAGAGAGATGAAACGTTCCAGCGAGCTTCGCGAGAATTCTCAGGAGCCGGAGCCAATGGAGATCAATTCTCACCGTGTCTTATCAAAGGCAAAAGCCATGCCTACCGAATTGGAGCTCGAGGAATTCTTCGCTGCCTCGGAGAAAGACATTCAGAAACGATTTCAAGACAGATACAATTATGATATTGTTAAGGACGTACCGCTGGAAGGACGCTACGAGTGGGTTCAGTTGAAGCCTTGA
Predicted protein sequences of Glyma.11g056700
>Glyma.11g056700.1.p sequence-type=predicted peptide transcript=Glyma.11g056700.1 locus=Glyma.11g056700 ID=Glyma.11g056700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSAQVGVRTRAQAALAMEAVSSAEPSSKRKKISNSTNQEPKLSKTPRTSSSSAVKPATVTEMVQPVSPEMVQQRCLSPTSSEIPASCCSSNGSIGLDQDRIKLLDLEVESAQVETSTCNGGHEIERREMKRSSELRENSQEPEPMEINSHRVLSKAKAMPTELELEEFFAASEKDIQKRFQDRYNYDIVKDVPLEGRYEWVQLKP*






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