SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42930.1 | AT | alpha/beta-Hydrolases superfamily protein | JGI | N/A | IEA |
| AT5G67050.1 | AT | alpha/beta-Hydrolases superfamily protein | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0004806 | GO-mf | triglyceride lipase activity | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG4569 | KOG | Predicted lipase | JGI | N/A | IEA |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN | JGI | N/A | IEA |
| PTHR10992:SF274 | Panther | JGI | N/A | IEA | |
| PF01764 | PFAM | Lipase (class 3) | JGI | N/A | IEA |
| LIPAS-PWY | SoyCyc9 | triacylglycerol degradation | Plant Metabolic Network | ISS | |
| GN7V-48189 | SoyCyc9-rxn | triacylglycerol lipase | Plant Metabolic Network | ISS |
|
Glyma.11g055400 not represented in the dataset |
Glyma.11g055400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g186600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g05931 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g055400.2 sequence-type=transcript locus=Glyma.11g055400 ID=Glyma.11g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AGCCTTATCATTTTTGTCCCTTGCTCTTGTTCTCTAATTGGCCGAGCCAGAAGCCAATTTATTGGAGCTTGTTGGGAATGGCGTCGAAGCCGAATGACAAATGCAACAAAGGGTTCGCTGACAGCTATATGCTGTTGAGCCCTGAAGACGCTCATTTCTTCGATCTTCTTCGTGTGCTGTATTCCCGTAACTTGGGACACCGAAAATTCGTGGACAGCAATGCTGAGGGTTCTTATGAGGGAAGCTTCCGCAACAGATGGCTTATCTTCGTTTCTTTGGTGCTCCAGAAGCTTCTGTTGTTCATCGCTAAGCCACTTTCGTTCTTCGGCTCTTGCGTTGAGTTCTTCATCAACCTCCTTGTCCTCAACGGTGGCTTCATCATGATCGTCATTAACTTCCTCTCAGGTCACCTGGTCATCCCCGATCGTAATGCACCAATTATGTGTCTTGCATCGGAAATTTGGACACGCGAGTAAAGTTGGATGCCATCACGCGGGATGACTGCAGGTACTATGTTGCATTAGCTATGATGGCTTCAAAGGCATCCTATGAGAATGCAGCTTACCTTAAATCTCTAATAAAATATCACTGGAAGATGGAATTCGTGGGATTTTTTGACTGCTGGAACGATTTTCAAGAAAAGCCCACAACCCAAGTCTTGGTTGTTTTGGACAAGCATGAGGACCGCGATACTTACGTGGTGGCTTTCCGAGGAACGGAACCCTTTGATGCAGATGCATGGTGCACTGACCTTGACATCTCATGGTACGGGATTCCCGGCATTGGAAAAATGCATGGTGGCTTCATGAAAGCCTTAGGGCTACAGAAAAATGTGGGGTGGCCTAAGGAGATTCAAAGGGATGAAAATCTTCCCCCCTTTGCCTACTATGTTATTAGGGACATTCTAAGAAAAGGTTTAAGTGAAAATCCTAATGCAAAGTTGATTATTACGGGTCATAGTTTGGGTGGGGCACTCGCAATTCTCTACCCTACGATCGTGTTCTTGCATGATGAGAAGTTGCTGATGGAGAGGTTGGAAGGGATCTACACTTTTGGGCAACCAAGAGTTGGAGATGAAGCATATGCACAGTACATGAGACAAAAATTAAGGGAAAATTCTATCAGGTATTGCAGATTTGTTTATTGCAATGATATAGTTCCGAGGTTGCCCTATGATAACGACTTGCTCTTCAAGCACTTTGGGATCTGCCTTTTCTTTAACAGGCGCTATGAACTCAGGATTCTCGAAGAAGAGCCTAATAAGAATTATTTCTCGCCATGGTGTGTGATACCCATGATGTTCAATGCTGTTTTGGAACTAATAAGGAGCTTTACCATTGCGTTCAAGAATGGACCTCACTATAGAGAAGGATGGTTTCTTTTTGGCTTCAGGTTGTTTGGTTTGCTGATTCCTGGCTTACCTGCTCATGGTCCACAAGATTATATTAATTCCACTCTTCTGGGATCAATTGAAAAACATTTTAAAGCAGATTGATGTGTCCGTGTACTGTACATGATCATTCCGTACCACTCCATGTGTATGGTCATGCAAACTAAAATTTACGTGATATATAATCAAGTTTTTCAATTTAAATAATAATAATAACACTTGATTATGTATGTGAAGAATAGTTAATATCATTAATGAGATCAATGTGCAGTTTGTTTATTTCACTACAGGA
>Glyma.11g055400.1 sequence-type=CDS polypeptide=Glyma.11g055400.1.p locus=Glyma.11g055400 ID=Glyma.11g055400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGTCGAAGCCGAATGACAAATGCAACAAAGGGTTCGCTGACAGCTATATGCTGTTGAGCCCTGAAGACGCTCATTTCTTCGATCTTCTTCGTGTGCTGTATTCCCGTAACTTGGGACACCGAAAATTCGTGGACAGCAATGCTGAGGGTTCTTATGAGGGAAGCTTCCGCAACAGATGGCTTATCTTCGTTTCTTTGGTGCTCCAGAAGCTTCTGTTGTTCATCGCTAAGCCACTTTCGTTCTTCGGCTCTTGCGTTGAGTTCTTCATCAACCTCCTTGTCCTCAACGGTGGCTTCATCATGATCGTCATTAACTTCCTCTCAGATTTTCAAGAAAAGCCCACAACCCAAGTCTTGGTTGTTTTGGACAAGCATGAGGACCGCGATACTTACGTGGTGGCTTTCCGAGGAACGGAACCCTTTGATGCAGATGCATGGTGCACTGACCTTGACATCTCATGGTACGGGATTCCCGGCATTGGAAAAATGCATGGTGGCTTCATGAAAGCCTTAGGGCTACAGAAAAATGTGGGGTGGCCTAAGGAGATTCAAAGGGATGAAAATCTTCCCCCCTTTGCCTACTATGTTATTAGGGACATTCTAAGAAAAGGTTTAAGTGAAAATCCTAATGCAAAGTTGATTATTACGGGTCATAGTTTGGGTGGGGCACTCGCAATTCTCTACCCTACGATCGTGTTCTTGCATGATGAGAAGTTGCTGATGGAGAGGTTGGAAGGGATCTACACTTTTGGGCAACCAAGAGTTGGAGATGAAGCATATGCACAGTACATGAGACAAAAATTAAGGGAAAATTCTATCAGGTATTGCAGATTTGTTTATTGCAATGATATAGTTCCGAGGTTGCCCTATGATAACGACTTGCTCTTCAAGCACTTTGGGATCTGCCTTTTCTTTAACAGGCGCTATGAACTCAGGATTCTCGAAGAAGAGCCTAATAAGAATTATTTCTCGCCATGGTGTGTGATACCCATGATGTTCAATGCTGTTTTGGAACTAATAAGGAGCTTTACCATTGCGTTCAAGAATGGACCTCACTATAGAGAAGGATGGTTTCTTTTTGGCTTCAGGTTGTTTGGTTTGCTGATTCCTGGCTTACCTGCTCATGGTCCACAAGATTATATTAATTCCACTCTTCTGGGATCAATTGAAAAACATTTTAAAGCAGATTGA >Glyma.11g055400.2 sequence-type=CDS polypeptide=Glyma.11g055400.2.p locus=Glyma.11g055400 ID=Glyma.11g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATGGCTTCAAAGGCATCCTATGAGAATGCAGCTTACCTTAAATCTCTAATAAAATATCACTGGAAGATGGAATTCGTGGGATTTTTTGACTGCTGGAACGATTTTCAAGAAAAGCCCACAACCCAAGTCTTGGTTGTTTTGGACAAGCATGAGGACCGCGATACTTACGTGGTGGCTTTCCGAGGAACGGAACCCTTTGATGCAGATGCATGGTGCACTGACCTTGACATCTCATGGTACGGGATTCCCGGCATTGGAAAAATGCATGGTGGCTTCATGAAAGCCTTAGGGCTACAGAAAAATGTGGGGTGGCCTAAGGAGATTCAAAGGGATGAAAATCTTCCCCCCTTTGCCTACTATGTTATTAGGGACATTCTAAGAAAAGGTTTAAGTGAAAATCCTAATGCAAAGTTGATTATTACGGGTCATAGTTTGGGTGGGGCACTCGCAATTCTCTACCCTACGATCGTGTTCTTGCATGATGAGAAGTTGCTGATGGAGAGGTTGGAAGGGATCTACACTTTTGGGCAACCAAGAGTTGGAGATGAAGCATATGCACAGTACATGAGACAAAAATTAAGGGAAAATTCTATCAGGTATTGCAGATTTGTTTATTGCAATGATATAGTTCCGAGGTTGCCCTATGATAACGACTTGCTCTTCAAGCACTTTGGGATCTGCCTTTTCTTTAACAGGCGCTATGAACTCAGGATTCTCGAAGAAGAGCCTAATAAGAATTATTTCTCGCCATGGTGTGTGATACCCATGATGTTCAATGCTGTTTTGGAACTAATAAGGAGCTTTACCATTGCGTTCAAGAATGGACCTCACTATAGAGAAGGATGGTTTCTTTTTGGCTTCAGGTTGTTTGGTTTGCTGATTCCTGGCTTACCTGCTCATGGTCCACAAGATTATATTAATTCCACTCTTCTGGGATCAATTGAAAAACATTTTAAAGCAGATTGA
>Glyma.11g055400.1.p sequence-type=predicted peptide transcript=Glyma.11g055400.1 locus=Glyma.11g055400 ID=Glyma.11g055400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASKPNDKCNKGFADSYMLLSPEDAHFFDLLRVLYSRNLGHRKFVDSNAEGSYEGSFRNRWLIFVSLVLQKLLLFIAKPLSFFGSCVEFFINLLVLNGGFIMIVINFLSDFQEKPTTQVLVVLDKHEDRDTYVVAFRGTEPFDADAWCTDLDISWYGIPGIGKMHGGFMKALGLQKNVGWPKEIQRDENLPPFAYYVIRDILRKGLSENPNAKLIITGHSLGGALAILYPTIVFLHDEKLLMERLEGIYTFGQPRVGDEAYAQYMRQKLRENSIRYCRFVYCNDIVPRLPYDNDLLFKHFGICLFFNRRYELRILEEEPNKNYFSPWCVIPMMFNAVLELIRSFTIAFKNGPHYREGWFLFGFRLFGLLIPGLPAHGPQDYINSTLLGSIEKHFKAD* >Glyma.11g055400.2.p sequence-type=predicted peptide transcript=Glyma.11g055400.2 locus=Glyma.11g055400 ID=Glyma.11g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MMASKASYENAAYLKSLIKYHWKMEFVGFFDCWNDFQEKPTTQVLVVLDKHEDRDTYVVAFRGTEPFDADAWCTDLDISWYGIPGIGKMHGGFMKALGLQKNVGWPKEIQRDENLPPFAYYVIRDILRKGLSENPNAKLIITGHSLGGALAILYPTIVFLHDEKLLMERLEGIYTFGQPRVGDEAYAQYMRQKLRENSIRYCRFVYCNDIVPRLPYDNDLLFKHFGICLFFNRRYELRILEEEPNKNYFSPWCVIPMMFNAVLELIRSFTIAFKNGPHYREGWFLFGFRLFGLLIPGLPAHGPQDYINSTLLGSIEKHFKAD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
