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Report for Sequence Feature Glyma.11g054700

Feature Type:gene_model
Chromosome:Gm11
Start:4121615
stop:4125297
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g054700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36940.1AT nicotinate phosphoribosyltransferase 1 JGI N/AIEA
GO:0009435GO-bp NAD biosynthetic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004514GO-mf nicotinate-nucleotide diphosphorylase (carboxylating) activity EnsemblGenomesN/AIEA
PTHR11098Panther NICOTINATE PHOSPHORIBOSYLTRANSFERASE JGI N/AIEA
PTHR11098:SF1Panther NICOTINATE PHOSPHORIBOSYLTRANSFERASE JGI N/AIEA
PWY-5381SoyCyc9 pyridine nucleotide cycling (plants) Plant Metabolic Network ISS
GN7V-47679SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.11g054700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g054700 not represented in the dataset
Glyma.11g054700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g054700
ParalogEvidenceComments
Glyma.01g187500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g054700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.11g054700
>Glyma.11g054700.1 sequence-type=CDS polypeptide=Glyma.11g054700.1.p locus=Glyma.11g054700 ID=Glyma.11g054700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATACTGGAAAGCTGGCAAACATCAAGAACAAGCTGTGTTTGATTTGTATTTTCGGAAGAACCCCTTTGGAGGAATGCGTGAGGTTCGTTACTAATTACAAGCTCACCAAGGAAGACATTGATTATATCAAAAATAATTTGTCTGTTTCATGTGAGGATGGCTTTCTGGACTATCTTAGAGGAATTGACTGTTCTGATGTTGAGTTCTATGCTATTCCCAAAGGATCAGTTGTTTTTCTTAAGGTGCCCCTATTGAGAATTGAAGGTCCAATTGCCGTTGTTCAATTGCTGGAAACACCTTTTGTCTATCTAATTAATTTTGCATCATTAGTTTCTACTAATGCTGCAAGGCATCGTTTTGTTGCTGGAAAACCAAAAACTCTACTTGAGTTTGGACTACGAAGGGCTCAGGGGCCTGATGGTGGAGTGGGTGCATCAAAGTACAGTTACATTGGGGGATTTGATGCAACAAGCGATCGAATTCACTACGTGGCAATTTTGCTGAGACCAATCAAAGTGAGCTGGCCGCATTCACATATGCATTGGCATTTCCTGATAACTTTCTAG
Predicted protein sequences of Glyma.11g054700
>Glyma.11g054700.1.p sequence-type=predicted peptide transcript=Glyma.11g054700.1 locus=Glyma.11g054700 ID=Glyma.11g054700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHTGKLANIKNKLCLICIFGRTPLEECVRFVTNYKLTKEDIDYIKNNLSVSCEDGFLDYLRGIDCSDVEFYAIPKGSVVFLKVPLLRIEGPIAVVQLLETPFVYLINFASLVSTNAARHRFVAGKPKTLLEFGLRRAQGPDGGVGASKYSYIGGFDATSDRIHYVAILLRPIKVSWPHSHMHWHFLITF*






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