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Report for Sequence Feature Glyma.11g054600

Feature Type:gene_model
Chromosome:Gm11
Start:4115043
stop:4119025
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g054600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36930.1AT basic helix-loop-helix (bHLH) DNA-binding superfamily protein JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
KOG2483 KOG Upstream transcription factor 2/L-myc-2 protein JGI N/AIEA
PTHR10014Panther BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCRIPTION FACTOR JGI N/AIEA
PTHR10014:SF30Panther JGI N/AIEA
PTHR12565Panther STEROL REGULATORY ELEMENT-BINDING PROTEIN JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.11g054600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g054600 not represented in the dataset
Glyma.11g054600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g054600
ParalogEvidenceComments
Glyma.01g187600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g054600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g05810 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.11g054600
>Glyma.11g054600.2 sequence-type=transcript locus=Glyma.11g054600 ID=Glyma.11g054600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGGGGGGCTGTTATGAGTTGGTCTGTGGTTGATAGTGATATTGATAACTGTGGGTGTGGAAAAAAGAAATCTAAACTTCGATTCCTGGAGGGTGTTGAGGCTCCGGCCGAAGAAGTTCCAACAAAGGCTGCTTCTTCTAGGAGTTCATCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCAGAGAAGCGGAGAAGGGGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAACCTAATTCCAAATTCTAACAAGACAGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTACAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAGTTGTCTCAGATGGGTATGGAATTAAGTGAAAGAAACAGGTTTACCTCTTTAAACATGTCAGCTACTCTGCCTCTGCACCAAGACAACAATCCCTTGCACTATGCATCCAATCTACCTAACAAACACAATCTCCCAAATCAGCCATCTGTGCCCTATCCTCCATACATTGACAACCCAGAAACTTCTTTCGGTCTGGAACCCCGAATCCAAACGGATATGAAACCTCTTCAACACAAAGGAGGATCTTCTGAGCCAATACGAGGGGAAGACATTTTGCAGCACCAGCAATCAAGTGGTATCCATTCAGATGCCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAATCAGGCACGAGACTATCATTCCCTTTTGACACGCAAGCATGTGAACCCAAAGACAACAGCAACTCTTCGCAACCATGCATTGGCGGAAGAGATCATTCAGGAGTGATCATAAGAAATAGTGAGACCAACATTGTTGGTAGGTAGGTATATGATGCTTATGTGAATGATATGTAGCTAGGTTCGTGCATGCAATGCAACATGTCTTGAAAAGCTTTTCACCAGAGACTGCAGAAGGGAGAAAGTGGTCAGTGGCAACTCGAAGACCGAAAAGTCAGATTTTTGAAGTTTACTGCCAGTAATGCCTTCTGAATTTTGGTTTCGTAAAAGCAGGAATCTCAATATTATCCCTTGAGCATTTTGTAATGTTCTCAAAAAGCCTCTGGCCTACGTGACATGAGAGCAGATTTTTTTTTTTTTCTCTTTCTAGCTTCTCGAGTTGATAAAATTATGTATGTATAATGTATGCAGAGAATATAACTACCCATTGTTATGCGGATTATATAACCACTGTAGAATATCCTATGGTGGTTTTATTTCAGTTCACGATAAAAACAAATTGCCTATTTTTGTGCGTCATTTTCTTAACCGCACACAACGTAGCGAAGGTCGCCATTGGAG

>Glyma.11g054600.3 sequence-type=transcript locus=Glyma.11g054600 ID=Glyma.11g054600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTGCAGAACCTTTTCGTTGAGGAGGGTGTTGAGGCTCCGGCCGAAGAAGTTCCAACAAAGGCTGCTTCTTCTAGGAGTTCATCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCAGAGAAGCGGAGAAGGGGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAACCTAATTCCAAATTCTAACAAGACAGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTACAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAGTTGTCTCAGATGGGTATGGAATTAAGTGAAAGAAACAGGTTTACCTCTTTAAACATGTCAGCTACTCTGCCTCTGCACCAAGACAACAATCCCTTGCACTATGCATCCAATCTACCTAACAAACACAATCTCCCAAATCAGCCATCTGTGCCCTATCCTCCATACATTGACAACCCAGAAACTTCTTTCGGTCTGGAACCCCGAATCCAAACGGATATGAAACCTCTTCAACACAAAGGAGGATCTTCTGAGCCAATACGAGGGGAAGACATTTTGCAGCACCAGCAATCAAGTGGTATCCATTCAGATGCCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAATCAGGCACGAGACTATCATTCCCTTTTGACACGCAAGCATGTGAACCCAAAGACAACAGCAACTCTTCGCAACCATGCATTGGCGGAAGAGATCATTCAGGAGTGATCATAAGAAATAGTGAGACCAACATTGTTGGTAGGTAGGTATATGATGCTTATGTGAATGATATGTAGCTAGGTTCGTGCATGCAATGCAACATGTCTTGAAAAGCTTTTCACCAGAGACTGCAGAAGGGAGAAAGTGGTCAGTGGCAACTCGAAGACCGAAAAGTCAGATTTTTGAAGTTTACTGCCAGTAATGCCTTCTGAATTTTGGTTTCGTAAAAGCAGGAATCTCAATATTATCCCTTGAGCATTTTGTAATGTTCTCAAAAAGCCTCTGGCCTACGTGACATGAGAGCAGATTTTTTTTTTTTTCTCTTTCTAGCTTCTCGAGTTGATAAAATTATGTATGTATAATGTATGCAGAGAATATAACTACCCATTGTTATGCGGATTATATAACCACTGTAGAATATCCTATGGTGGTTTTATTTCAGTTCACGATAAAAACAAATTGCCTATTTTTGTGCGTCATTTTCTTAACCGCACACAACGTAGCGAAGGTCGCCATTGGAG
Coding sequences of Glyma.11g054600
>Glyma.11g054600.1 sequence-type=CDS polypeptide=Glyma.11g054600.1.p locus=Glyma.11g054600 ID=Glyma.11g054600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGACATGTACCACTTTGACAAGAACCTCTCCTCACAAGACGAAATCTCACTTTTTCTGCGTCAGATTCTGCTCCGTTCATCTTCACCTTCCCACTCCATGCCTGCTGGATCCTGCACCTCCAACGCTGCTCAACAAAACGTAAATGCACACCACCCTTCTTTCACGGCGTCACAGCTCCAAGATGGGAAGATCTTGGCCGTTGATTCCACCGCTTCTTTTGTCTCCGGTTCTGCTGCTTGCAGTTCCTTCAAGGGCCATGGTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGCTGGAGTGAGTGAGAACGAGAATGATGACTATGATTGTGAGAGTGAGGAGGGTGTTGAGGCTCCGGCCGAAGAAGTTCCAACAAAGGCTGCTTCTTCTAGGAGTTCATCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCAGAGAAGCGGAGAAGGGGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAACCTAATTCCAAATTCTAACAAGACAGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTACAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAGTTGTCTCAGATGGGTATGGAATTAAGTGAAAGAAACAGGTTTACCTCTTTAAACATGTCAGCTACTCTGCCTCTGCACCAAGACAACAATCCCTTGCACTATGCATCCAATCTACCTAACAAACACAATCTCCCAAATCAGCCATCTGTGCCCTATCCTCCATACATTGACAACCCAGAAACTTCTTTCGGTCTGGAACCCCGAATCCAAACGGATATGAAACCTCTTCAACACAAAGGAGGATCTTCTGAGCCAATACGAGGGGAAGACATTTTGCAGCACCAGCAATCAAGTGGTATCCATTCAGATGCCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAATCAGGCACGAGACTATCATTCCCTTTTGACACGCAAGCATGTGAACCCAAAGACAACAGCAACTCTTCGCAACCATGCATTGGCGGAAGAGATCATTCAGGAGTGATCATAAGAAATAGTGAGACCAACATTGTTGGTAGGTAG

>Glyma.11g054600.2 sequence-type=CDS polypeptide=Glyma.11g054600.2.p locus=Glyma.11g054600 ID=Glyma.11g054600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTGGTCTGTGGTTGATAGTGATATTGATAACTGTGGGTGTGGAAAAAAGAAATCTAAACTTCGATTCCTGGAGGGTGTTGAGGCTCCGGCCGAAGAAGTTCCAACAAAGGCTGCTTCTTCTAGGAGTTCATCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCAGAGAAGCGGAGAAGGGGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAACCTAATTCCAAATTCTAACAAGACAGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTACAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAGTTGTCTCAGATGGGTATGGAATTAAGTGAAAGAAACAGGTTTACCTCTTTAAACATGTCAGCTACTCTGCCTCTGCACCAAGACAACAATCCCTTGCACTATGCATCCAATCTACCTAACAAACACAATCTCCCAAATCAGCCATCTGTGCCCTATCCTCCATACATTGACAACCCAGAAACTTCTTTCGGTCTGGAACCCCGAATCCAAACGGATATGAAACCTCTTCAACACAAAGGAGGATCTTCTGAGCCAATACGAGGGGAAGACATTTTGCAGCACCAGCAATCAAGTGGTATCCATTCAGATGCCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAATCAGGCACGAGACTATCATTCCCTTTTGACACGCAAGCATGTGAACCCAAAGACAACAGCAACTCTTCGCAACCATGCATTGGCGGAAGAGATCATTCAGGAGTGATCATAAGAAATAGTGAGACCAACATTGTTGGTAGGTAG

>Glyma.11g054600.3 sequence-type=CDS polypeptide=Glyma.11g054600.3.p locus=Glyma.11g054600 ID=Glyma.11g054600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGCTTTGCAAAACCTAATTCCAAATTCTAACAAGACAGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTACAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAGTTGTCTCAGATGGGTATGGAATTAAGTGAAAGAAACAGGTTTACCTCTTTAAACATGTCAGCTACTCTGCCTCTGCACCAAGACAACAATCCCTTGCACTATGCATCCAATCTACCTAACAAACACAATCTCCCAAATCAGCCATCTGTGCCCTATCCTCCATACATTGACAACCCAGAAACTTCTTTCGGTCTGGAACCCCGAATCCAAACGGATATGAAACCTCTTCAACACAAAGGAGGATCTTCTGAGCCAATACGAGGGGAAGACATTTTGCAGCACCAGCAATCAAGTGGTATCCATTCAGATGCCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAATCAGGCACGAGACTATCATTCCCTTTTGACACGCAAGCATGTGAACCCAAAGACAACAGCAACTCTTCGCAACCATGCATTGGCGGAAGAGATCATTCAGGAGTGATCATAAGAAATAGTGAGACCAACATTGTTGGTAGGTAG
Predicted protein sequences of Glyma.11g054600
>Glyma.11g054600.1.p sequence-type=predicted peptide transcript=Glyma.11g054600.1 locus=Glyma.11g054600 ID=Glyma.11g054600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDMYHFDKNLSSQDEISLFLRQILLRSSSPSHSMPAGSCTSNAAQQNVNAHHPSFTASQLQDGKILAVDSTASFVSGSAACSSFKGHGASAANVSSSSAGVSENENDDYDCESEEGVEAPAEEVPTKAASSRSSSKRSRAAEVHNLSEKRRRGRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQPLQLSQMGMELSERNRFTSLNMSATLPLHQDNNPLHYASNLPNKHNLPNQPSVPYPPYIDNPETSFGLEPRIQTDMKPLQHKGGSSEPIRGEDILQHQQSSGIHSDANTLGGSQVVKEFESGTRLSFPFDTQACEPKDNSNSSQPCIGGRDHSGVIIRNSETNIVGR*

>Glyma.11g054600.2.p sequence-type=predicted peptide transcript=Glyma.11g054600.2 locus=Glyma.11g054600 ID=Glyma.11g054600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSWSVVDSDIDNCGCGKKKSKLRFLEGVEAPAEEVPTKAASSRSSSKRSRAAEVHNLSEKRRRGRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQPLQLSQMGMELSERNRFTSLNMSATLPLHQDNNPLHYASNLPNKHNLPNQPSVPYPPYIDNPETSFGLEPRIQTDMKPLQHKGGSSEPIRGEDILQHQQSSGIHSDANTLGGSQVVKEFESGTRLSFPFDTQACEPKDNSNSSQPCIGGRDHSGVIIRNSETNIVGR*

>Glyma.11g054600.3.p sequence-type=predicted peptide transcript=Glyma.11g054600.3 locus=Glyma.11g054600 ID=Glyma.11g054600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQPLQLSQMGMELSERNRFTSLNMSATLPLHQDNNPLHYASNLPNKHNLPNQPSVPYPPYIDNPETSFGLEPRIQTDMKPLQHKGGSSEPIRGEDILQHQQSSGIHSDANTLGGSQVVKEFESGTRLSFPFDTQACEPKDNSNSSQPCIGGRDHSGVIIRNSETNIVGR*






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