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Report for Sequence Feature Glyma.11g053000

Feature Type:gene_model
Chromosome:Gm11
Start:3983555
stop:3987585
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g053000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67230.1AT Nucleotide-diphospho-sugar transferases superfamily protein JGI N/AIEA
GO:0009834GO-bp plant-type secondary cell wall biogenesis EnsemblGenomesN/AIEA
GO:0010417GO-bp glucuronoxylan biosynthetic process EnsemblGenomesN/AIEA
GO:0071555GO-bp cell wall organization EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015018GO-mf galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity EnsemblGenomesN/AIEA
GO:0015018GO-mf galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0042285GO-mf xylosyltransferase activity EnsemblGenomesN/AIEA
KOG1476 KOG Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 JGI N/AIEA
PTHR10896Panther GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE (BETA-1,3-GLUCURONYLTRANSFERASE) JGI N/AIEA
PTHR10896:SF1Panther JGI N/AIEA
PF03360PFAM Glycosyltransferase family 43 JGI N/AIEA
PWY-5800SoyCyc9 xylan biosynthesis Plant Metabolic Network ISS
GN7V-66314SoyCyc9-rxn 1,4-β-D-xylan synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.11g053000
LocusGene SymbolProtein Name
PGLCAT8 glycosyltransferase

Expression Patterns of Glyma.11g053000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g053000
ParalogEvidenceComments
Glyma.01g189200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g053000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g05640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g053000
>Glyma.11g053000.1 sequence-type=CDS polypeptide=Glyma.11g053000.1.p locus=Glyma.11g053000 ID=Glyma.11g053000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCTCTCGGCGTTGCAGCAGAGTTACCTCACGCGCCGGGCGAACAGCTTCAGAGGATCGGCGCAGTTGGATTCGTCCGCCGACGGCGCGGTGAAGTCGCCGGCGGCGATTTTCTGGCTTGTAATCCACGGCGTCTGCTGCCTCATCAGCTTGGTTCTCGGCTTCCGCTTCTCGCGCCTCGTCTTCTTCTTCCTCTTCTCGACAAGCCTCTACACCGCGCCGTTCCGGAGCGGTTCGGAAATCGCGGCTCCGCATGACGTTCCTCCGGCGGCGAACCGGACGGCGATGCTGAGCACCGCGAGCCGCGTGGTAGTCGGGCGGCACGGGATCCGAATCCGCCCGTGGCCGCATCCGGATCCCGTGGAGGTGATGAAGGCGCACCGCATAATCGAGAGAGTGCAGAGAGAGCAGAGGGCGCTGTTCGGAGTGAAAAACCCTAGGACGGTGATCGCGGTGACGCCGACGCACGTTCGCACGTTCCAGACGCTGCATTTGACCGGTGTGATGCACGCGCTGATGCTGGTGCCGTACGATCTGGTGTGGATCGTGGTGGAGGCCGGTGGAGTCACCAACGAAACCGCCTCAATTATCGCCAAGTCAGGCCTCAGAACAATCCACGTTGGCTTTTCTCAGCGAATGCCGAATTCGTGGGAAGCTAGGCATAAACTCGAGTCTCGGATGCGACTTCATGCTTTGAGAATTGTGAGAAAAGAGAAGCTGGATGGAGTTGTGGTGTTTGCTGATGATAGTAATATGCACAGTATGGAGTTGTTTGATGAGGCGCAAAATGTGAACTGGATTGGGGCTGTTTCGGTTGGAATTTTGCTTCATTCGGATGAATCTTCGTATATGGTTCAAAGTGAGGAGGAAGGTGCTTCTATGCCTGTGCAGGGTCCTGCTTGTAATGCTACGGATAAATTGGTTGGGTGGCATACTTTCAATTCGTTGCAGTATACGGGGAGGAGTGCGGTTTATATTGATGACAGGGCGCCTGTGCTGCCCAGAAAGCTTGAGTGGTCTGGGTTTGTGTTGAATTCCAGGTTGGTTTGGAAGGATGTGGATGGTAAGCCAGAGTGGGTTAAGGATCTTGATAAATTTGATGGGGTTGATGAAGAGATAGAGACTCCATTGTCCTTGCTCAAGAGCACCTCTGTGGTAGAGCCGCTTGGGAATTGTGGACGGCAAGTTTTGCTTTGGTGGCTGAGGGTTGAAGCTCGCACAGACAGCAAATTTCCTTCTCGATGGATAATTGACCCTCCTTTGGACATCACTATCCCATCAAAACGCAGTCCATGGCCAGATGCTCCTCCTGAGCTCCCATCTAATGAAAAAGTTTTAACCAACACACAAGAGCAGACAAACAAGCCCTCTACAAGAACCAAATCACCCAGATCCCGGCGCAGTAGAAGCAAGAAAAAGCATGATACCAAAGTGATAGGTGTGCAAGTCTCAACATATTCCGAACAAAACTAA
Predicted protein sequences of Glyma.11g053000
>Glyma.11g053000.1.p sequence-type=predicted peptide transcript=Glyma.11g053000.1 locus=Glyma.11g053000 ID=Glyma.11g053000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLSALQQSYLTRRANSFRGSAQLDSSADGAVKSPAAIFWLVIHGVCCLISLVLGFRFSRLVFFFLFSTSLYTAPFRSGSEIAAPHDVPPAANRTAMLSTASRVVVGRHGIRIRPWPHPDPVEVMKAHRIIERVQREQRALFGVKNPRTVIAVTPTHVRTFQTLHLTGVMHALMLVPYDLVWIVVEAGGVTNETASIIAKSGLRTIHVGFSQRMPNSWEARHKLESRMRLHALRIVRKEKLDGVVVFADDSNMHSMELFDEAQNVNWIGAVSVGILLHSDESSYMVQSEEEGASMPVQGPACNATDKLVGWHTFNSLQYTGRSAVYIDDRAPVLPRKLEWSGFVLNSRLVWKDVDGKPEWVKDLDKFDGVDEEIETPLSLLKSTSVVEPLGNCGRQVLLWWLRVEARTDSKFPSRWIIDPPLDITIPSKRSPWPDAPPELPSNEKVLTNTQEQTNKPSTRTKSPRSRRSRSKKKHDTKVIGVQVSTYSEQN*






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