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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19420.1 | AT | PTEN 2 | JGI | N/A | IEA |
| GO:0006470 | GO-bp | protein dephosphorylation | JGI | N/A | IEA |
| GO:0016311 | GO-bp | dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0035335 | GO-bp | peptidyl-tyrosine dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0004725 | GO-mf | protein tyrosine phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0004725 | GO-mf | protein tyrosine phosphatase activity | JGI | N/A | IEA |
| GO:0008138 | GO-mf | protein tyrosine/serine/threonine phosphatase activity | JGI | N/A | IEA |
| KOG2283 | KOG | Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases | JGI | N/A | IEA |
| PTHR12305 | Panther | PHOSPHATASE WITH HOMOLOGY TO TENSIN | JGI | N/A | IEA |
| PTHR12305:SF8 | Panther | JGI | N/A | IEA | |
| PF00782 | PFAM | Dual specificity phosphatase, catalytic domain | JGI | N/A | IEA |
| PF10409 | PFAM | C2 domain of PTEN tumour-suppressor protein | JGI | N/A | IEA |
| GN7V-47837 | SoyCyc9-rxn | phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase | Plant Metabolic Network | ISS |
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Glyma.11g052700 not represented in the dataset |
Glyma.11g052700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g189500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g05610 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g052700.1 sequence-type=CDS polypeptide=Glyma.11g052700.1.p locus=Glyma.11g052700 ID=Glyma.11g052700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAACCAGCTTCAGCTGATTCTTCATCTCAACCTACTCCTCCAGCTTCTAATACTGAAGATCGGCACTCAACCAAAGCGTCTGGACAAACTGGCAATGCACATGATTCACAATTGTCATCACCCACTTCTGGCATATCATCCTGGGCAAGAAATCTGAAATTCCCACAGGCCCTTGGGCTTGGAGGAGCACAACAGAACTCCCAGGCCCAAAACGCTGGCATGTCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCAAACGCTATCAAATGAAACTGCTCCAGTCAAGTCAGGAACCGAGCAATCTAACTTACTTGAATCCGTCACCAAAGGCTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGCGGTGCAGGTCAAAGCTCGCCATATTGTCTCTCAAAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGACATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATTTTAGCTCTGGAATTTTTGGATACATTGAGGGGTTCTATCGCAATCACATGGATGAAGTGATCAAGTTTTTTGAAACACATCATAAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGACGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTAGTCTTCTTTTATTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAATCCTCCCTAGTCAGATTAGATATGTAAAATACTTTGAACGGACTTTAACACACTTCAATGGAGAAGTCCAGCCAGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCACGAATGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATAAGGGAATTCTTTTTACCACAAGAAAGCATCCCAAAACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGCACCAAAGAAAGGAATTGTGGTTTTTGCCCTACCAGGAGAGCCTGGTCTAACAGAGTTGGTAGGAGACTTCAAAATTCAGTTTCAAGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACATTGACAGAAAACCGAAAAATTTTGGATGGTTCAGATTTTGATGGTTTCGACAAGAGAAAGATCCCTGCTCCAGGATTCAAGGTGGAAATTGTGATGATAGGGTATAATGCCATCCTACCTGCAAATACAAAATCGAATCCTGCCAGCAAAGGATCTGATGGAAACACAAGCAATGCCCTACCTGGTCTAAAGCATACTACATCTAATTCAAGTGAGAGTGAAGTCCCTAGAAATGGAGATGATGATGTATTCTCAGACAGTGACGAAGAGGAGACCCGGGATACACAAAGCACGAAAGCTGCAACTGAGTACAAATTTATGGCACCTCATCAAGTATCTGAGACAACAACTGACCATGTAGGGATGTTGACACACAAAACGGATCAGTTGTCACTACAACAAGAGGAACGCAAGCAAAACGTTGCTTCTGAAGAATCAGATACAGATAAACTTCATAAAAATCATACAGGCAATAACAGTATAAACATGGGATCTGTAGGGGCAAGTGACATCAAGGCAATCGCGGCAGATGCTTCAGTTTTTTCCTTTGGAGATGAAGATTTTGAAAGTGACTGA
>Glyma.11g052700.1.p sequence-type=predicted peptide transcript=Glyma.11g052700.1 locus=Glyma.11g052700 ID=Glyma.11g052700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEPASADSSSQPTPPASNTEDRHSTKASGQTGNAHDSQLSSPTSGISSWARNLKFPQALGLGGAQQNSQAQNAGMSAFARLTGGLGLQTLSNETAPVKSGTEQSNLLESVTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMDEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNHKRCVDGKALILPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHECPYWVRPSITISDHKGILFTTRKHPKTKDLMPEDFWISAPKKGIVVFALPGEPGLTELVGDFKIQFQDRQGDFYCWMNTTLTENRKILDGSDFDGFDKRKIPAPGFKVEIVMIGYNAILPANTKSNPASKGSDGNTSNALPGLKHTTSNSSESEVPRNGDDDVFSDSDEEETRDTQSTKAATEYKFMAPHQVSETTTDHVGMLTHKTDQLSLQQEERKQNVASEESDTDKLHKNHTGNNSINMGSVGASDIKAIAADASVFSFGDEDFESD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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