Report for Sequence Feature Glyma.11g047700
Feature Type: gene_model
Chromosome: Gm11
Start: 3562284
stop: 3564548
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.11g047700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G37650.1 AT
GRAS family transcription factor
JGI N/A IEA
GO:0006351 GO-bp
transcription, DNA-templated
EnsemblGenomes N/A IEA
GO:0006355 GO-bp
regulation of transcription, DNA-templated
EnsemblGenomes N/A IEA
GO:0008356 GO-bp
asymmetric cell division
EnsemblGenomes N/A IEA
GO:0009956 GO-bp
radial pattern formation
EnsemblGenomes N/A IEA
GO:0045930 GO-bp
negative regulation of mitotic cell cycle
EnsemblGenomes N/A IEA
GO:0048366 GO-bp
leaf development
EnsemblGenomes N/A IEA
GO:0055072 GO-bp
iron ion homeostasis
EnsemblGenomes N/A IEA
GO:0005634 GO-cc
nucleus
EnsemblGenomes N/A IEA
GO:0003700 GO-mf
DNA binding transcription factor activity
EnsemblGenomes N/A IEA
GO:0043565 GO-mf
sequence-specific DNA binding
EnsemblGenomes N/A IEA
PF03514 PFAM
GRAS domain family
JGI N/A IEA
Expression Patterns of Glyma.11g047700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.11g047700
Paralog Evidence Comments
Glyma.01g194200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.11g047700 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma11g05110 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.11g047700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.11g047700.1 sequence-type=CDS polypeptide=Glyma.11g047700.1.p locus=Glyma.11g047700 ID=Glyma.11g047700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATACCACGTTGTTTAGAGTAGTGAGTAGTTTCCAACATCACCAAGCTGATCAAGATCATCAATCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCAGACAAGAGCAAAACTATCCCTACCCACAAGAACACGACGAAGAATGCTTCAACTTTTTCATGGATGATGAAGACTTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTCCCTCCACTACCGACCATTCCTTCTCCCCCACTCCCGGCGTCGACGTTGTCTTCCCCTTCGAGTTCTCCTCCGGAAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGTGCCGTTGCCGACAAGAACACCACCCGCCTTCAACAACTCATGTGGATGCTAAACGAGCTCAGCTCCCCCTACGGCGACACCGACCAGAAACTAGCCTCGTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGGGACCGAACCTACAAAACCTTAGCTTCAGCTTCCGAGAAAACATGCTCCTTCGAATCAACCCGCAAGACGGTGCTGAAGTTCCAAGAGTTGAGTCCCTGGACAACCTTCGGCCACGTGGCATCCAATGGCGCCATCTTAGAAGCCTTGGAAGGAGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCTTGGCAACTCGAAACGATGACACTCCGCATCTCCGTTTAACCTCCGTCGTCACCGCCGGCGCCACCGCGCAGAAGGTCATGAAGGAAATCGGAGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTAAATTCAACGTCGTTCATCATGTAGGTCAACTCTCTGACCTCGATTTCAGTGTGCTAGATATTAAAGAAGACGAGGCGTTGGCGATTAACTGTGTTAACACCTTGCATTCGATCGCCGCCGTGGGGAACCACCGTGACGCGGTTATATCTTCGTTGAGGAGGTTGAAACCGAGGATCGTGACGGTGGTGGAGGAGGAGGCTGATTTGGACATTGGATTGGAAGGGTTTGAGTTCGTGAAAGGGTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCCTTGGACGAGAGTTTTCCGCGGACGAGCAACGAGCGTTTGATGCTTGAGAGGGCGGCGGGGAGGGCGGTGGTGGACCTGGTGGCGTGTTCTCCGGCGGATTCCGTAGAGAGGCGGGAGAAGGCGGCGCGGTGGGCGAGGAGGATGCATGGAGGTGGGGGGTTCAATACGGTGGCGTTTAGCGAAGAGGTATGCGATGATGTGAGGGCGTTGTTGAGGAGGTATAGGGAAGGGTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG
Predicted protein sequences of Glyma.11g047700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.11g047700.1.p sequence-type=predicted peptide transcript=Glyma.11g047700.1 locus=Glyma.11g047700 ID=Glyma.11g047700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDTTLFRVVSSFQHHQADQDHQSLNNSTTSSSSRSSRQEQNYPYPQEHDEECFNFFMDDEDLSSSSSKHYYPYQPHPPSTTDHSFSPTPGVDVVFPFEFSSGKWAQDILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRITQAGDRTYKTLASASEKTCSFESTRKTVLKFQELSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTAGATAQKVMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSVLDIKEDEALAINCVNTLHSIAAVGNHRDAVISSLRRLKPRIVTVVEEEADLDIGLEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLMLERAAGRAVVDLVACSPADSVERREKAARWARRMHGGGGFNTVAFSEEVCDDVRALLRRYREGWAMTQCSDAGIFLTWKEQPVVWASAWRALT*