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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65720.1 | AT | nitrogen fixation S (NIFS)-like 1 | JGI | N/A | IEA |
| GO:0006520 | GO-bp | cellular amino acid metabolic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0044571 | GO-bp | [2Fe-2S] cluster assembly | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | JGI | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0031071 | GO-mf | cysteine desulfurase activity | EnsemblGenomes | N/A | IEA |
| KOG1549 | KOG | Cysteine desulfurase NFS1 | JGI | N/A | IEA |
| PTHR11601 | Panther | CYSTEINE DESULFURYLASE | JGI | N/A | IEA |
| PF00266 | PFAM | Aminotransferase class-V | JGI | N/A | IEA |
| PWY-6823 | SoyCyc9 | molybdenum cofactor biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7250 | SoyCyc9 | [2Fe-2S] iron-sulfur cluster biosynthesis | Plant Metabolic Network | ISS | |
| PWY0-1021 | SoyCyc9 | L-alanine biosynthesis III | Plant Metabolic Network | ISS | |
| PWY0-1507 | SoyCyc9 | biotin biosynthesis from 8-amino-7-oxononanoate I | Plant Metabolic Network | ISS | |
| GN7V-45981 | SoyCyc9-rxn | cysteine desulfurase | Plant Metabolic Network | ISS |
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Glyma.11g044600 not represented in the dataset |
Glyma.11g044600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g197100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g04800 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g044600.1 sequence-type=CDS polypeptide=Glyma.11g044600.1.p locus=Glyma.11g044600 ID=Glyma.11g044600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACCTCTAAACTAATTGCTTCCAATCTCCGTCACCAAATCACAAAATCAGCTCAAAACCTTCGCCGCCAGCTTCTTTCCACGGCGGCGGCGGTGGCGGTGCCTGAACACGATGGGAACAACTCCAACTCGTCGGGAATGACGATGAAGGGCGTTCGAATCTCCGGAAGACCCCTTTACCTGGACGTGCAGGCAACATCTCCGGTGGACCCGCGCGTGCTCGACGCGATGCTCCCTTTCTACCTCTCTCGCTACGGAAACCCTCACTCCCGCACCCACTTCTACGGCTGGGAATCCGACGAGGCCGTGGAACACGCGCGCGCTCAGGTAGCGTCCCTCATCGGCGCGTCCCCCAAGGAGATAGTCTTCACCTCCGGCGCCACCGAGTCCAATAACATCTCCGTCAAGGGCGTCATGCATTTCTACAAGGACAAGAAGCGCCACGTCATAACCACGCAAACGGAGCACAAGTGCGTCCTCGATTCCTGCCGCCACCTCCAGCAGGAGGGTTTCGATGTCACTTATCTTCCCGTTGAGTCCGACGGGTTGATTGATTTGGATGAGCTTCGGGCTTCGATTAGGCCTGACACCGGGCTCGTTTCGGTTATGGCGGTGAACAATGAAATTGGAGTGGTTCAGCCCATGGAGGAAATTGGGAGGATTTGCAAGGAGTTTAATGTGCCTTTCCACACTGATGCAGCTCAGGCTTTGGGGAAGATTCCCATTGATGTGGAGAGGTGGAATGTGAGTTTGATGTCGTTGAGTGGCCATAAGATTTATGGGCCGAAGGGGGTTGGGGCTTTGTATATGCGTCGGAGGCCCAGGATTAGGGTTGAGCCTCAGATGAATGGTGGTGGGCAGGAGAGGGGGATTAGGAGTGGGACTGTTCCAACTCCTTTGGTTGTTGGGATGGGTGCGGCGTGTGAGGTGGCGAAGGACGAGATGGAGTATGATGAAAAGAGGATTTCTGCTTTGCAGCAGAGACTGCTTAATGGGATTAGAGAGAAGCTTGATGGGGTGGTAGTGAATGGGAGCTTGGAGAGGCGCTATGTGGGGAATTTGAATTTGTCGTTTGCTTACGTTGAAGGGGAGAGTCTGCTTATGGGGTTGAAGGAGGTGGCTGTGTCCAGTGGCAGTGCCTGCACTAGTGCTAGTTTGGAGCCTTCTTATGTGTTGAGGGCGTTGGGAGTTGAAGAGGACATGGCTCACACTTCTATTAGGTTTGGAATTGGTAGGTTCACTACCGAGGCTGAGATTGATAGGGCGGTTGAACTCACTGTTCAACAGGTGGAGAAGTTGAGGGAAATGAGTCCGCTTTATGAAATGGTCAAGGAAGGTATCAACATCAAGGACATTCAATGGGCACAGCACTGA
>Glyma.11g044600.1.p sequence-type=predicted peptide transcript=Glyma.11g044600.1 locus=Glyma.11g044600 ID=Glyma.11g044600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTSKLIASNLRHQITKSAQNLRRQLLSTAAAVAVPEHDGNNSNSSGMTMKGVRISGRPLYLDVQATSPVDPRVLDAMLPFYLSRYGNPHSRTHFYGWESDEAVEHARAQVASLIGASPKEIVFTSGATESNNISVKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVESDGLIDLDELRASIRPDTGLVSVMAVNNEIGVVQPMEEIGRICKEFNVPFHTDAAQALGKIPIDVERWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVVGMGAACEVAKDEMEYDEKRISALQQRLLNGIREKLDGVVVNGSLERRYVGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTEAEIDRAVELTVQQVEKLREMSPLYEMVKEGINIKDIQWAQH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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