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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17830.1 | AT | Peptidase M20/M25/M40 family protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| KOG2276 | KOG | Metalloexopeptidases | JGI | N/A | IEA |
| PTHR11014 | Panther | PEPTIDASE M20 FAMILY MEMBER | JGI | N/A | IEA |
| PTHR11014:SF7 | Panther | ACETYLORNITHINE DEACETYLASE | JGI | N/A | IEA |
| PF01546 | PFAM | Peptidase family M20/M25/M40 | JGI | N/A | IEA |
| PF07687 | PFAM | Peptidase dimerisation domain | JGI | N/A | IEA |
| ARGSYN-PWY | SoyCyc9 | L-arginine biosynthesis I (via L-ornithine) | Plant Metabolic Network | ISS | |
| GLUTORN-PWY | SoyCyc9 | L-ornithine biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-49929 | SoyCyc9-rxn | acetylornithine deacetylase | Plant Metabolic Network | ISS |
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Glyma.11g043300 not represented in the dataset |
Glyma.11g043300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g198600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g04650 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g043300.1 sequence-type=CDS polypeptide=Glyma.11g043300.1.p locus=Glyma.11g043300 ID=Glyma.11g043300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCGGCGACGAACTTGTTAGCAACACTGGGGGATCTGGAGAGGGACTCCTTCGTGGCTCTTCTTTCGAAGCTGATCGCTGAATCGAAGTACGTCCAGAACAACCCGCCGGAGCTCATTCCCCAAGAGGACAGAGTGGTGAAGCACGTCTTGGACGTTCTGTTACCGTTCAGCACCACCACCGGCGGTGGACCCTTGCTCGTAAACCACGTCACCTACCACGCCGGCAGAGGGAACCTCATCGTGGAGTACCCCGGCACCGTTCCCGGCAAAATCCTCTCGTTCGTCGGATGCCACATGGACGTCGTGACCGCCAATCCCAACGATTGGGATTTCGATCCATTTTCGTTGAGCGTTGACGGTGATAAGCTTCGGGGTCGTGGAACTACTGACTGTTTGGGACACGTGGCGCTTGTCACGGAACTCATGAGGAAGCTCGGGGAGACCAAGCCCAATTTGAAGTCAAGTGTTGTTGCTGTTTTTATCGCCAATGAAGAGAATTCTGCGATAACTGGTGTTGGTGTGGATGCACTTGTCAAAGATGGCCTCCTCAATAAACTCAAGGATGGCCCTCTGTATTGGATTGACACGGCGGATAAACAACCATGCGTTGGGACTGGTGGTATGATACCTTGGAAACTTCACGTCACCGGGAGGCTCTTTCATAGTGGATTAGCTCATAAAGCTATAAATGCGCTAGAGCTAGCCATGGATGCTCTAAAGGAAATCCAGTTGCGATTTTACTCAGACTTCCCACCTCATCCTCAGGAACAGGTTTATGGGTTTGCAACCCCTTCAACCCTGAAGCCAACCCAATGGAGTTATCCAGGAGGTGGAATCAATCAAATTCCAGGGGAATGTACAATTTCAGGAGATGTCAGATTAACTCCATTCTACAATGTAAAGGATGTTATGAAAAAGCTGCAAGAATACGTGGACGATATTAATGAGAGTGCACAGAAGCTAGAATCTAGGGGTCCAGTTTCAAAATATGTCCTACCTGATGAAAACATAAGAGGAAGACTTACTTTATCTTTTGATGAGGCACTGTCTGGAGTTGCTTGTGATCTTAATTCTAGAGGTTTTCATGTTTTATGCAAAGCAACTGAAGAAGTAGTTGGGTATGTAAAGCCTTACTCTATTACTGGGAGTTTGCCTCTCATTCGGGAACTACAGGAAGAAGGTTTTGATGTTCAAACTTCTGGCTACGGCCTAATGGCTACTTACCATGCCCAGAATGAGTACTGCCTCTTTACGGATATGTCCCAAGGATATCGGGTCTTCGCGAGAATCATCTCTCAATTGGAAGAGTGA
>Glyma.11g043300.1.p sequence-type=predicted peptide transcript=Glyma.11g043300.1 locus=Glyma.11g043300 ID=Glyma.11g043300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAAATNLLATLGDLERDSFVALLSKLIAESKYVQNNPPELIPQEDRVVKHVLDVLLPFSTTTGGGPLLVNHVTYHAGRGNLIVEYPGTVPGKILSFVGCHMDVVTANPNDWDFDPFSLSVDGDKLRGRGTTDCLGHVALVTELMRKLGETKPNLKSSVVAVFIANEENSAITGVGVDALVKDGLLNKLKDGPLYWIDTADKQPCVGTGGMIPWKLHVTGRLFHSGLAHKAINALELAMDALKEIQLRFYSDFPPHPQEQVYGFATPSTLKPTQWSYPGGGINQIPGECTISGDVRLTPFYNVKDVMKKLQEYVDDINESAQKLESRGPVSKYVLPDENIRGRLTLSFDEALSGVACDLNSRGFHVLCKATEEVVGYVKPYSITGSLPLIRELQEEGFDVQTSGYGLMATYHAQNEYCLFTDMSQGYRVFARIISQLEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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