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Report for Sequence Feature Glyma.11g042500

Feature Type:gene_model
Chromosome:Gm11
Start:3111713
stop:3115280
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g042500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17970.1AT aluminum-activated, malate transporter 12 JGI N/AIEA
GO:0006810GO-bp transport JGI N/AIEA
GO:0015743GO-bp malate transport EnsemblGenomesN/AIEA
GO:0015743GO-bp malate transport JGI N/AIEA
GO:0071423GO-bp malate transmembrane transport EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane JGI N/AIEA
GO:0009705GO-cc plant-type vacuole membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015140GO-mf malate transmembrane transporter activity EnsemblGenomesN/AIEA
KOG4711 KOG Predicted membrane protein JGI N/AIEA
PF11744PFAM Aluminium activated malate transporter JGI N/AIEA

Proteins Associated with Glyma.11g042500
LocusGene SymbolProtein Name
ALMT21 aluminum-activated malate transporter family protein

Expression Patterns of Glyma.11g042500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g042500
ParalogEvidenceComments
Glyma.01g199400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g042500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g04570 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g042500
>Glyma.11g042500.1 sequence-type=CDS polypeptide=Glyma.11g042500.1.p locus=Glyma.11g042500 ID=Glyma.11g042500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCCCAAAGTTTATGCTGGTCAGGAAATGGCAGTGGTTGAGAATGAGAATTGCATGATGAATGGGAAGTGGAAGAAACGTGTGCATGTTTTTGGTGAGAGGGTGATGAGATTTCCTAACAAGGCTTGGCAGACTACGTGGAAAGTGGGACGTGAAGACCCAAGAAGGTTGATCCATGCATTCAAAGTGGGTTTGTCTCTAACTCTTGTTTCTTTGTTGTATTTGTTGGAGCCCCTTTACAAGGGGATTGGACAGAGTGCTATTTGGGCTGTCATGACCGTGGTTGTTGTGTTGGAATTCACCGCAGGGGCAACTTTATGCAAAGGACTCAACAGAGGATTGGGGACATTGTTAGCGGGATTATTGGCATTTCTTGTTGGGTATATTGCAAGTGCATCTGGCCGAGTCTGTCAAGCTATTATCATCGGAGCTGCAGTTTTTTCTATAGGAGCTCTTGCTACTTATATGAGGTTTATTCCCTATATAAAGAAGAATTATGACTATGGTCTAGTTATATTTCTCTTGACTTTCAACCTGATTGCTGTGTCGAGCTACCGGGCTGAAAATGTCTTGAAAATTGCACATGATCGCGTATACACCATTGCCATAGGCTGTGCTGTTTGCCTTCTGATGAGTCTACTGGTATTTCCAAATTGGTCAGGCGAAGATCTCCATAATTCCACGGTTTACAAGCTCGAAGGCCTTGCCAAATCTATAGAAGCTTGTGTGAATGAGTACTTTTACGGAGAAATTGAAGGCTCTGGGGATATGAAATTATCTGAGGATCCAATATACAAAGGTTATAAGGCTGTTTTGGATTCAAAATCCATTGATGAAACACTGGCATTGCATGCAAGTTGGGAGCCAAGGCATTCAAGGTACTGCCACAGGTTTCCATGGCAGCAATATGTAAAAGTCGGAGCTGTTCTTCGTCAATTTGGTTATACTGTGGTAGCCCTACATGGCTGTTTGAGAACAGAAATTCAGACACCTAGATCTGTTAGAGCCATGTTCAAGGACCCCTGCATTCGGCTAGCAGCAGAGGTATCGAAAGTACTGATAGAACTTTCCAACAGCATAAGGAATCGCCGGCATTGCTCTCCAGAAATACTCTCGGATCATCTGCACGAAGCCTTACAGGACCTAAACACTGCCATAAAATCTCAACCTCGACTCTTCTTAGGCCCCAAAAACAGGCACAACCAAGCCACCAACATGCTCAAAATAGCTGCCGAACAAGTTGGACAAGAAAGACATGGAAAGACCTCCCTTTCAAGTGTTAAAACCGACTCTTCGGCGTTGCTGGAATGGAAAACAAAAAGGGTTTCAGTTGAACAGACAAAGGAATCAGAAAGGAAGTCTTTGAGGCCGCAACTGAGTAAAATTGCAATAACTAGCCTTGAGTTCTCTGAGGCGCTTCCTTTCGCCGCCTTTGCGTCTTTGCTTGTGGAAACAGTGGCTAAACTGGACCTTGTCATAGAGGAAGTTGAGGAACTGGGGAGACTAGCATGCTTTAAAGACTTCATACCCGGGGATGACTTTGTTGTCACTTGTCAGGAGCCTCGAATTGACGTGTCACAGAACCATTTACCTTCTCATGGAGCCGACTAA
Predicted protein sequences of Glyma.11g042500
>Glyma.11g042500.1.p sequence-type=predicted peptide transcript=Glyma.11g042500.1 locus=Glyma.11g042500 ID=Glyma.11g042500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPKVYAGQEMAVVENENCMMNGKWKKRVHVFGERVMRFPNKAWQTTWKVGREDPRRLIHAFKVGLSLTLVSLLYLLEPLYKGIGQSAIWAVMTVVVVLEFTAGATLCKGLNRGLGTLLAGLLAFLVGYIASASGRVCQAIIIGAAVFSIGALATYMRFIPYIKKNYDYGLVIFLLTFNLIAVSSYRAENVLKIAHDRVYTIAIGCAVCLLMSLLVFPNWSGEDLHNSTVYKLEGLAKSIEACVNEYFYGEIEGSGDMKLSEDPIYKGYKAVLDSKSIDETLALHASWEPRHSRYCHRFPWQQYVKVGAVLRQFGYTVVALHGCLRTEIQTPRSVRAMFKDPCIRLAAEVSKVLIELSNSIRNRRHCSPEILSDHLHEALQDLNTAIKSQPRLFLGPKNRHNQATNMLKIAAEQVGQERHGKTSLSSVKTDSSALLEWKTKRVSVEQTKESERKSLRPQLSKIAITSLEFSEALPFAAFASLLVETVAKLDLVIEEVEELGRLACFKDFIPGDDFVVTCQEPRIDVSQNHLPSHGAD*






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