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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47010.1 | AT | RNA helicase, putative | JGI | N/A | IEA |
| GO:0000184 | GO-bp | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | EnsemblGenomes | N/A | IEA |
| GO:0000184 | GO-bp | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | EnsemblGenomes | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| KOG1802 | KOG | RNA helicase nonsense mRNA reducing factor (pNORF1) | JGI | N/A | IEA |
| PTHR10887 | Panther | DNA2/NAM7 HELICASE FAMILY | JGI | N/A | IEA |
| PTHR10887:SF26 | Panther | JGI | N/A | IEA | |
| PF04851 | PFAM | Type III restriction enzyme, res subunit | JGI | N/A | IEA |
| PF09416 | PFAM | RNA helicase (UPF2 interacting domain) | JGI | N/A | IEA |
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Glyma.11g040200 not represented in the dataset |
Glyma.11g040200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g202600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g04310 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g040200.1 sequence-type=CDS polypeptide=Glyma.11g040200.1.p locus=Glyma.11g040200 ID=Glyma.11g040200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACTCGCAACAGAACAATCTTTTCGAGACCGCTTCGCAACCCGACACCGGCAACGACGCCTACACCTTTCTCGAGTTCAACACGCAGGGCGAGGATTTCGACTATCCCGAGTTCCGCGACCCGATTAGGTCGCCGGTTGCGTGGCCAACGCCGTCTGATTCGCTCGCGGACCCGTCGGAGCGAGGCGGCGGCGGGGGAGGCGGTTCTGATCACCAATCAGATACCTCGCCTGTCTCCGCGGCTCCCGGGAGTGCCACAAAGGGCGGCCGGTCGGGGAGCGGTGGTGGCGGGAACAGCAGCCAGATGGTGGATGCGCTCGCGGCGGGGATGAGCGGATTGAATTTCGAGGACACCGGTGATGATGATAACTATGAGTATGGGAAAGGGGATTTCACTGAACACGCTTGCCGGTATTGCGGGGTTTCCAATCCCGCGTGTGTTGTGAGGTGCAATGTGCCTTCTTGTCGCAAGTGGTTCTGTAATTCTCGGGGGAACACTTCTGGATCGCATATCGTCAATCACCTGGTTCGGGCTAAACACAAGGAAGTCTGCCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGTAATGTGTTTCTTCTTGGATTTATTTCTGCAAAGACGGAAAGTGTAGTCGTCCTTCTTTGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCTCGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCCGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCTCCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAGGAATCACAAAGCAAGGACAATGTCACTATCCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTATTTCCAAAGGAAGATAACGAGTTGCGGCTTGTGCCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCACGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAATCAGGGGGTTCCAGTTGATGTTAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGTTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTACCATCACTTATTGGGTCATGAAGTTGAGGTTCAAATGGTGCGTAATGCCCTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCAGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTGCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACCGTAACATCTGCAGCACTTGTATATCACATGGCCAAGCAAGGCCAGGGGCAGGTTTTGGTTTGTGCTCCCAGTAATGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAGTCAAGGGAAGCTGTGAGTTCTCCCGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACATCAGACAAGAGCGAACTTCATAAGTTACAACAGCTGAAGGATGAACAAGGCGAACTTTCCAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAAAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCCACTCAAGCAACTGAACCCGAGTGCCTTATACCCTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCCCGTGCTGGGTTAGCACAGTCACTTTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAGTATCGTATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGCTTCTATGAAGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGACAATCTTCCGGAATTGATTTTCCTTGGCCAGTGCCAAACCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCTTATGAGGGGCAAAGGGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGATTCCTGAATGATCCTAGGAGGCTCAACGTTGCTTTGACACGAGCAAGATATGGCATTGTTATTTTGGGAAACCCTAAAGTTTTGAGCAAGCAGCCTCTATGGAATAGTTTATTGACTCACTACAAGGAGCATGAGTGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAAAGTATGGTTCAGTTCCAGAAACCCAAGAAGATTTACAATGAACGAAGGCTTTTTTATGGGGGTGGACCTGGAATTGCATCTAATGATAATTTTGGTAACGTTGGATCTGGTGCTGGCACAAGTTCAGATCGGAGGAGCAGTCGAGGAAGGGGATCTTATATACCTCCTGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTCCTGTGCCAAGGGTTCCCTTGCCTCATTTTCATGGTGGTCCCCAATCTCAACCATATGCCATTCCATCTCGTGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCTCCAGGGAGTCGAGGTTTTGGGGCTGGGAGAGGTAATTCTGGTGCTCCTCCAATTGGCAATCATCTACCTCATCAACAAGGCACCCAACAGCCTATTGGATCTACATTTAACTTCCCTGCTCTAGAGAATCCCAACAGCCAGCCATCTGTTGGTGGTCCATTATCCCAACCTGGGTTTGCCAACAATATGCATGTTCAAGGGGCTGGCCAATCATTTCGTGATCAATTTTCTATGCCTGGAATGTCCCAGGACTTCTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCGTATAATGTCACTGATTTCTCTACGCAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAATTTTCTTAACCAGAATTCTCAAGCTGGATATTCTCGCTTTGGTTCTGGAAACGACTTTATGTCACAGGACTACATGGGCCATGGATCACAAGGCCTTTTCACTCAGGTGGGGTTCAGTGATCCCTTGCAAGATGATGCAACACAGAGCCATTTCAGTGTGGCAAATGCCAACCCTCTTCAGTCCCAGATGAATTCTCTTTACTCCCAACCTTTTGCTCACTACAACACACAGCCGCTTAACATGCAGGCTACCCAACAGCAGCCTCAGGCTCAGAACTCCCAAAATCAGAAAATCCACTATAACGTTTGA
>Glyma.11g040200.1.p sequence-type=predicted peptide transcript=Glyma.11g040200.1 locus=Glyma.11g040200 ID=Glyma.11g040200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPSERGGGGGGGSDHQSDTSPVSAAPGSATKGGRSGSGGGGNSSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIASNDNFGNVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPPVPRVPLPHFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPPIGNHLPHQQGTQQPIGSTFNFPALENPNSQPSVGGPLSQPGFANNMHVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFSDPLQDDATQSHFSVANANPLQSQMNSLYSQPFAHYNTQPLNMQATQQQPQAQNSQNQKIHYNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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