Glyma.11g039100

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Report for Sequence Feature Glyma.11g039100

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2786085
stop:	2789533
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g039100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47080.1	AT	casein kinase II beta chain 1	JGI	N/A	IEA
GO:0045859	GO-bp	regulation of protein kinase activity	EnsemblGenomes	N/A	IEA
GO:0005956	GO-cc	protein kinase CK2 complex	EnsemblGenomes	N/A	IEA
GO:0005956	GO-cc	protein kinase CK2 complex	JGI	N/A	IEA
GO:0019887	GO-mf	protein kinase regulator activity	EnsemblGenomes	N/A	IEA
GO:0019887	GO-mf	protein kinase regulator activity	JGI	N/A	IEA
KOG3092	KOG	Casein kinase II, beta subunit	JGI	N/A	IEA
PTHR11740	Panther	CASEIN KINASE II BETA CHAIN	JGI	N/A	IEA
PF01214	PFAM	Casein kinase II regulatory subunit	JGI	N/A	IEA

Expression Patterns of Glyma.11g039100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g039100

Paralog	Evidence	Comments
Glyma.01g203800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g039100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g04180	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.11g039100

Limit To All Plant Sequences

>Glyma.11g039100.1 sequence-type=CDS polypeptide=Glyma.11g039100.1.p locus=Glyma.11g039100 ID=Glyma.11g039100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACAGAGAGCGAGGAGGCGTCGGATCCAAATCGGAGGTAACTTCCGTTGATCGGAAGCGAATCAATGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCCAGAGCCGCCGGCGCCATCAACGGCAAGGACCGCTCCTCCTCTTCCCTCTTAGCCGCCGCCAAGGACTCCCGCTCCGCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCCGACGAGGAATCTGAAACAGACAGCGAGGAGTCTGATGTTAGTGGCTCCGACGGAGATGACACGTCGTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAATTCTTCTGCGAGGTTGATGACGATTACATCCAGGACGACTTCAACCTCTGTGGATTGAGCAGTCAAGTGCCTTACTATGATTATGCTCTGGATTTGATTTTGGATGTTGAATCCTCTCATGGTGACATGTTTACCGAGGAACAGAATGAGTTAATTGAATCAGCAGCCGAGATGCTTTATGGTCTGATTCATGCCCGGTACATATTGACAAGCAAAGGAATGGCTGCAATGCTCGACAAGTACAAGAACTATGATTTTGGCAGATGCCCACGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGGTCTAGTACTGTGAAAATATACTGCCCTCGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACTACGTTTCCTCATCTGTTCTTGATGACTTATGGACAACTAAAGCCACAGAAACCATCACAGAGCTATGTCCCGAGAGTTTTTGGCTTCAAACTTCACAAGCCCTGA

Predicted protein sequences of Glyma.11g039100

Limit To All Plant Sequences

>Glyma.11g039100.1.p sequence-type=predicted peptide transcript=Glyma.11g039100.1 locus=Glyma.11g039100 ID=Glyma.11g039100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYRERGGVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAGAINGKDRSSSSLLAAAKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP*

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