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Report for Sequence Feature Glyma.11g039000

Feature Type:gene_model
Chromosome:Gm11
Start:2779083
stop:2783973
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g039000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17620.1AT glycine-rich protein JGI N/AIEA
AT4G17620.2AT glycine-rich protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
KOG1982 KOG Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p JGI N/AIEA
PTHR12395Panther DOM-3 RELATED JGI N/AIEA
PTHR12395:SF9Panther PROTEIN DOM3Z JGI N/AIEA
PF08652PFAM RAI1 like PD-(D/E)XK nuclease JGI N/AIEA

Expression Patterns of Glyma.11g039000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g039000
ParalogEvidenceComments
Glyma.01g204000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g039000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g04170 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.11g039000
>Glyma.11g039000.2 sequence-type=transcript locus=Glyma.11g039000 ID=Glyma.11g039000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTGCATTTCACTGAAACGAGAAAAGCGTGTCGAATGGATTTCACGGAGAAGGATCTATTCGGCGAAGATTCCGACAACGACAACGGGTCCCActcctccggttcctcttcttcttcctccgccgcttcctcttcctcatcatcctccgcctcctcttccgcctcttcctccaaagccagcgacgccgccgccgactcctcctccgccagcggcagcgcaagcagcggcgccGAAAACGACGACGAGAATGGCGACGTCGTAGATAGCACCAAAGTCCGCGCCCATCACCATCACGACTACGAAGACAAAGATCTGTTTGGCTCCGATAATGAAGATTACTGTAAAACCCTCGCTAGAAGTCCTTACCCCATTCCTGTATTGCCTGCCATCCGCAATGTGCATAATCAGGGTAGAGGGGGGTTTGGCCGTGGTCGTTGGCAAAATGATAGAGGAGCTGGCCTTCTTCCTCGTCCCGGACCTTATCCTCAGAGGCAGAATTTTGGGTATGGAAATAGGTTTCAGGATGGCCGCCATGACGAGCGATTTGTCTCTGAGTTGAAGCTTTCAAAAAGTGAAGAAACTCTATCAAGAAAGTGCATTGCTTTTCAGGAGCCTTGTGAAGTTGCCTGCTATAGTCGTGCAGAAGGCAGAGAAGTATACTTCGACGATCGTAGCTTGAGACTTTTTAAGCGCCATATCACTGAGGATGTTGGAGCTGATTTGAATGAAGGTTATGATACATACATTCCCAAAAAAGACTTAGGCTCACAGGGATTTGGTGATCTTCTTGCTTGCATTAGAGACAAAAATATCCCGCTTCAAAACATTCATTTTGTGACATTCCGTAACAATCTTAACAAGATACTGGCAACAGCTTATATCCGTCACGAGCCTTGGGAAATGGGAGTGCACAAAAGGAATGGTGTTGTCTATCTTGATGTGCACAAATTACCAGAAAAACCTCAAAGTGATTTGGATCGCAGGAGATGTTATGTAGGATATTGTTTTGAGAGCCTTGCAACTGAAGATCCTAATAGAGCAGATGGAGAGGGGATACATCATGTTGATGCCAATGTTGAATTTTGTGCTGTGATTAAGACAAAATTAGGAGCTCACCGCATCTTAATGGGTGCTGAGATGGATTGCTGTGATTCGACTAATGAGGGAAAGAGATTTTATGTGGAGTTAAAGACAAGTTGTGAGTTAAATTATCACACCGAGGAAAGATTCGAGAGGGAGAAACTGTTGAAGTTTTGGATTCAGTCATTTCTGGCTGGTGTTCCATATATTGTCATAGGATTTAGGGATGATGCAGGTCGTCTTGTTCGGACAGAAAGACTTAGAACCAAAGATATAACACAGAGAGTGAAAATGAAGAACTACTGGCAGGTACATTTTAGCTGCTGTGAGGTGCATGGTGGCTAATCTTTGTTTTGGTCGGCCAATGCATTAGTTAATTAAAAGTATAGTAAACTTCCCTGTGGGGCTCGGAGGATGTTCCAAATTGTTTCCTTCTCCAACATCAGCGAGGAGGAGTCTGCTTGGCGTTTGCTGACGAGGTATTATGCTGGCTGTATGGAACAGTCAAAGAAGGTGAAGATTATATTTTGCAGTTTGCTCCACCTTTCAACCGATTGGAGCTTCTGCAATCCCAGTCTTGCCCAGATGTAATCACTAGTCATCTGGAGCTGTTGTGAAAATTTAGAGAACTTAACAGTTATTATTTAAACAACTCAATATACGAAGTAAGGGGAATCAACTCTGGATTTTCCCCCGCTGCTTTGATCAGTTCACTAATTTGTAGTATAGGGGGCACCCTCTGTGAGTGCTGAGAATTGCATTCGCATCTTTATAGAAATTTGTGGAAATATTATGGCCTTGCTTAGTTGGAATATAGTAGTTCTTCATTTTACTGTTTTGACCTTTATGCTTCCATTTTCTAAACTTGAGTTTGGAACACTTGAAAAAA
Coding sequences of Glyma.11g039000
>Glyma.11g039000.1 sequence-type=CDS polypeptide=Glyma.11g039000.1.p locus=Glyma.11g039000 ID=Glyma.11g039000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTCACGGAGAAGGATCTATTCGGCGAAGATTCCGACAACGACAACGGGTCCCACTCCTCCGGTTCCTCTTCTTCTTCCTCCGCCGCTTCCTCTTCCTCATCATCCTCCGCCTCCTCTTCCGCCTCTTCCTCCAAAGCCAGCGACGCCGCCGCCGACTCCTCCTCCGCCAGCGGCAGCGCAAGCAGCGGCGCCGAAAACGACGACGAGAATGGCGACGTCGTAGATAGCACCAAAGTCCGCGCCCATCACCATCACGACTACGAAGACAAAGATCTGTTTGGCTCCGATAATGAAGATTACTGTAAAACCCTCGCTAGAAGTCCTTACCCCATTCCTGTATTGCCTGCCATCCGCAATGTGCATAATCAGGGTAGAGGGGGGTTTGGCCGTGGTCGTTGGCAAAATGATAGAGGAGCTGGCCTTCTTCCTCGTCCCGGACCTTATCCTCAGAGGCAGAATTTTGGGTATGGAAATAGGTTTCAGGATGGCCGCCATGACGAGCGATTTGTCTCTGAGTTGAAGCTTTCAAAAAGTGAAGAAACTCTATCAAGAAAGTGCATTGCTTTTCAGGAGCCTTGTGAAGTTGCCTGCTATAGTCGTGCAGAAGGCAGAGAAGTATACTTCGACGATCGTAGCTTGAGACTTTTTAAGCGCCATATCACTGAGGATGTTGGAGCTGATTTGAATGAAGGTTATGATACATACATTCCCAAAAAAGACTTAGGCTCACAGGGATTTGGTGATCTTCTTGCTTGCATTAGAGACAAAAATATCCCGCTTCAAAACATTCATTTTGTGACATTCCGTAACAATCTTAACAAGATACTGGCAACAGCTTATATCCGTCACGAGCCTTGGGAAATGGGAGTGCACAAAAGGAATGGTGTTGTCTATCTTGATGTGCACAAATTACCAGAAAAACCTCAAAGTGATTTGGATCGCAGGAGATGTTATGTAGGATATTGTTTTGAGAGCCTTGCAACTGAAGATCCTAATAGAGCAGATGGAGAGGGGATACATCATGTTGATGCCAATGTTGAATTTTGTGCTGTGATTAAGACAAAATTAGGAGCTCACCGCATCTTAATGGGTGCTGAGATGGATTGCTGTGATTCGACTAATGAGGGAAAGAGATTTTATGTGGAGTTAAAGACAAGTTGTGAGTTAAATTATCACACCGAGGAAAGATTCGAGAGGGAGAAACTGTTGAAGTTTTGGATTCAGTCATTTCTGGCTGGTGTTCCATATATTGTCATAGGATTTAGGGATGATGCAGGTCGTCTTGTTCGGACAGAAAGACTTAGAACCAAAGATATAACACAGAGAGTGAAAATGAAGAACTACTGGCAGGGAGGAGTCTGCTTGGCGTTTGCTGACGAGGTATTATGCTGGCTGTATGGAACAGTCAAAGAAGGTGAAGATTATATTTTGCAGTTTGCTCCACCTTTCAACCGATTGGAGCTTCTGCAATCCCAGTCTTGCCCAGATGTAATCACTAGTCATCTGGAGCTGTTGTGA

>Glyma.11g039000.2 sequence-type=CDS polypeptide=Glyma.11g039000.2.p locus=Glyma.11g039000 ID=Glyma.11g039000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTCACGGAGAAGGATCTATTCGGCGAAGATTCCGACAACGACAACGGGTCCCACTCCTCCGGTTCCTCTTCTTCTTCCTCCGCCGCTTCCTCTTCCTCATCATCCTCCGCCTCCTCTTCCGCCTCTTCCTCCAAAGCCAGCGACGCCGCCGCCGACTCCTCCTCCGCCAGCGGCAGCGCAAGCAGCGGCGCCGAAAACGACGACGAGAATGGCGACGTCGTAGATAGCACCAAAGTCCGCGCCCATCACCATCACGACTACGAAGACAAAGATCTGTTTGGCTCCGATAATGAAGATTACTGTAAAACCCTCGCTAGAAGTCCTTACCCCATTCCTGTATTGCCTGCCATCCGCAATGTGCATAATCAGGGTAGAGGGGGGTTTGGCCGTGGTCGTTGGCAAAATGATAGAGGAGCTGGCCTTCTTCCTCGTCCCGGACCTTATCCTCAGAGGCAGAATTTTGGGTATGGAAATAGGTTTCAGGATGGCCGCCATGACGAGCGATTTGTCTCTGAGTTGAAGCTTTCAAAAAGTGAAGAAACTCTATCAAGAAAGTGCATTGCTTTTCAGGAGCCTTGTGAAGTTGCCTGCTATAGTCGTGCAGAAGGCAGAGAAGTATACTTCGACGATCGTAGCTTGAGACTTTTTAAGCGCCATATCACTGAGGATGTTGGAGCTGATTTGAATGAAGGTTATGATACATACATTCCCAAAAAAGACTTAGGCTCACAGGGATTTGGTGATCTTCTTGCTTGCATTAGAGACAAAAATATCCCGCTTCAAAACATTCATTTTGTGACATTCCGTAACAATCTTAACAAGATACTGGCAACAGCTTATATCCGTCACGAGCCTTGGGAAATGGGAGTGCACAAAAGGAATGGTGTTGTCTATCTTGATGTGCACAAATTACCAGAAAAACCTCAAAGTGATTTGGATCGCAGGAGATGTTATGTAGGATATTGTTTTGAGAGCCTTGCAACTGAAGATCCTAATAGAGCAGATGGAGAGGGGATACATCATGTTGATGCCAATGTTGAATTTTGTGCTGTGATTAAGACAAAATTAGGAGCTCACCGCATCTTAATGGGTGCTGAGATGGATTGCTGTGATTCGACTAATGAGGGAAAGAGATTTTATGTGGAGTTAAAGACAAGTTGTGAGTTAAATTATCACACCGAGGAAAGATTCGAGAGGGAGAAACTGTTGAAGTTTTGGATTCAGTCATTTCTGGCTGGTGTTCCATATATTGTCATAGGATTTAGGGATGATGCAGGTCGTCTTGTTCGGACAGAAAGACTTAGAACCAAAGATATAACACAGAGAGTGAAAATGAAGAACTACTGGCAGGTACATTTTAGCTGCTGTGAGGTGCATGGTGGCTAA
Predicted protein sequences of Glyma.11g039000
>Glyma.11g039000.1.p sequence-type=predicted peptide transcript=Glyma.11g039000.1 locus=Glyma.11g039000 ID=Glyma.11g039000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFTEKDLFGEDSDNDNGSHSSGSSSSSSAASSSSSSSASSSASSSKASDAAADSSSASGSASSGAENDDENGDVVDSTKVRAHHHHDYEDKDLFGSDNEDYCKTLARSPYPIPVLPAIRNVHNQGRGGFGRGRWQNDRGAGLLPRPGPYPQRQNFGYGNRFQDGRHDERFVSELKLSKSEETLSRKCIAFQEPCEVACYSRAEGREVYFDDRSLRLFKRHITEDVGADLNEGYDTYIPKKDLGSQGFGDLLACIRDKNIPLQNIHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYLDVHKLPEKPQSDLDRRRCYVGYCFESLATEDPNRADGEGIHHVDANVEFCAVIKTKLGAHRILMGAEMDCCDSTNEGKRFYVELKTSCELNYHTEERFEREKLLKFWIQSFLAGVPYIVIGFRDDAGRLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKEGEDYILQFAPPFNRLELLQSQSCPDVITSHLELL*

>Glyma.11g039000.2.p sequence-type=predicted peptide transcript=Glyma.11g039000.2 locus=Glyma.11g039000 ID=Glyma.11g039000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFTEKDLFGEDSDNDNGSHSSGSSSSSSAASSSSSSSASSSASSSKASDAAADSSSASGSASSGAENDDENGDVVDSTKVRAHHHHDYEDKDLFGSDNEDYCKTLARSPYPIPVLPAIRNVHNQGRGGFGRGRWQNDRGAGLLPRPGPYPQRQNFGYGNRFQDGRHDERFVSELKLSKSEETLSRKCIAFQEPCEVACYSRAEGREVYFDDRSLRLFKRHITEDVGADLNEGYDTYIPKKDLGSQGFGDLLACIRDKNIPLQNIHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYLDVHKLPEKPQSDLDRRRCYVGYCFESLATEDPNRADGEGIHHVDANVEFCAVIKTKLGAHRILMGAEMDCCDSTNEGKRFYVELKTSCELNYHTEERFEREKLLKFWIQSFLAGVPYIVIGFRDDAGRLVRTERLRTKDITQRVKMKNYWQVHFSCCEVHGG*






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