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Report for Sequence Feature Glyma.11g038900

Feature Type:gene_model
Chromosome:Gm11
Start:2773818
stop:2777295
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g038900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17615.1AT calcineurin B-like protein 1 JGI N/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding JGI N/AIEA
KOG0034 KOG Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein JGI N/AIEA
PTHR23056Panther CALCINEURIN B JGI N/AIEA
PTHR23056:SF16Panther JGI N/AIEA

Expression Patterns of Glyma.11g038900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g038900
ParalogEvidenceComments
Glyma.01g204100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g038900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g04160 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g038900
>Glyma.11g038900.1 sequence-type=CDS polypeptide=Glyma.11g038900.1.p locus=Glyma.11g038900 ID=Glyma.11g038900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTGTTTGCATTCCAAAGTAAGGGAATTTCCGGCAGAAGACCCATTTGCTCTAGCATCAGAGACAGCCTTCAGTGTTAATGATGTTGAAGCATTATATGAGCTTTTTAAGAGCATCAGTAGGTCCGTCGTTGATGATGGACTAATAAGTAAGGAAGAATTTCAATTGGCCATTTTCGATAATAAGAAAAAGGATAATCTTTTTACAAGTCGGATCTTTGATTTATTTGATGTTAAGAAAAAGGGAATGATTGACTTTGGTGACTTCGTTAGAGCGCTCAATGTCTTCCACCCATCTGTACCTATAGAAGTCAAGATAGATTTTTCATTTAGGCTCTACGACTTAGACAATACGGGATTTATAGAGCGTCAAGAGGTCGAGCAAATGCTAAATGCACTTCTTTGTGAAGCTGAAATTAAGTTGTCATATGAAATGATAGAAACAATTATTAACAAGACTTTCTTGGATGCCGACCTTAATCAAGATGGAAAAATAGACAAGTCTGAGTGGCTAAACTTTGTTTGTGAAAATCCTTCATTATTAAAAGTCATGACCCTGCCATACCTAAGGGACATAACAACTACTTTTCCAAGTTTTGTATTTCACTCAAAGGCGGAGGATGAAATTGCCGATTAA
Predicted protein sequences of Glyma.11g038900
>Glyma.11g038900.1.p sequence-type=predicted peptide transcript=Glyma.11g038900.1 locus=Glyma.11g038900 ID=Glyma.11g038900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGCLHSKVREFPAEDPFALASETAFSVNDVEALYELFKSISRSVVDDGLISKEEFQLAIFDNKKKDNLFTSRIFDLFDVKKKGMIDFGDFVRALNVFHPSVPIEVKIDFSFRLYDLDNTGFIERQEVEQMLNALLCEAEIKLSYEMIETIINKTFLDADLNQDGKIDKSEWLNFVCENPSLLKVMTLPYLRDITTTFPSFVFHSKAEDEIAD*






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