Glyma.11g034500

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Report for Sequence Feature Glyma.11g034500

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2507557
stop:	2511367
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g034500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16700.1	AT	phosphatidylserine decarboxylase 1	JGI	N/A	IEA
GO:0008654	GO-bp	phospholipid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0008654	GO-bp	phospholipid biosynthetic process	JGI	N/A	IEA
GO:0004609	GO-mf	phosphatidylserine decarboxylase activity	EnsemblGenomes	N/A	IEA
GO:0004609	GO-mf	phosphatidylserine decarboxylase activity	JGI	N/A	IEA
PTHR10067	Panther	PHOSPHATIDYLSERINE DECARBOXYLASE	JGI	N/A	IEA
PF02666	PFAM	Phosphatidylserine decarboxylase	JGI	N/A	IEA
PHOSLIPSYN2-PWY	SoyCyc9	superpathway of phospholipid biosynthesis II (plants)	Plant Metabolic Network		ISS
PWY-5669	SoyCyc9	phosphatidylethanolamine biosynthesis I	Plant Metabolic Network		ISS
GN7V-42022	SoyCyc9-rxn	phosphatidylserine decarboxylase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.11g034500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g034500 not represented in the dataset	Glyma.11g034500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.11g034500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g03730	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g034500

Limit To All Plant Sequences

>Glyma.11g034500.2 sequence-type=transcript locus=Glyma.11g034500 ID=Glyma.11g034500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGCTTTCATTTAGAGCTAGCCTGTACAAAGGGAGCAACATGGGAAGGAGTGGAAGCCACCCTAAATGGATGCTTAACTTGTAGTACTTCAAGGGTTAGCACCTCCCAATGCGGCAATGCCCAAAGGTCGTCTTTATCCCTTGAATGAACGTGCTATAAGAACAATTAGAAACCTCTATATTGAGAACGAGAGGGTTATTCTTGAAGGTCTATGGCTGGAAGGGTTTATGGCACTTGCTGCAATTGGTGACACAAATATTGGGTCAATTGAGCTTTTCATTGAGCCCGAACTTCATACAAACAGGCCAAGGAAGAAGTTTCTACATTCAGAGCCTCCTGAAGAACGGATTTATGAATGTGAAGGTTTAGGTAGAATGCTCAAGAAAGGGGATGAGTTAGGTGCTTTCAACATGGGATCAACAGTTGTTCTCGTTTTCCAAGCTCCAATTTCAAAACTCCATGAGGGCGATTCATTTCAAGAGTTCAGGTTCTGTGTTGGACGAGGGGATAGAATTCGTGTTGGCGAGGCTCTAGGGAGGTGGCATAGTTCGTGACAGAGCTATTTCTGTGTGCAGCTTATGAATATCGCTGCCCCTGACTGTTTGTGTTGAAACTTCAAAATATTTTCGATATTTTATATGGAGAATCTTTAGTACCTCTTACTGGAAACCGTGATTAGTAATTGATATTAATGGTACATTGGATATTTTGAGTTTTTGACGGTGTAGATGTTTTATTGCTCATCCAGAAAGCATAGAACCTTTGTGCAGATCCTCCGTTAATCAATTCTAGTGCAGTGTTACAGAAATTTATGGCAAGCAGCTAGCAATGTATATTTACAAACataaaattaagatctatcttatactataaatttcaaaataaataatacaatataGACACTATCATAATGCTTGGGTTAAATTAAAATGTTTTAAGATTAACACATAAATATTGATAGAAAAAATATTATAACCCTCATATCATAAATATTTAACACAATTTTATATCCAAAACTAAATTTCAAGATCGTTACTAGTTGATTCACGCTCATTGTGGTTCACTAAAGTAATTTTCAATTGAAGTAATTTTAGATTTGTCACTATAAACTAAATGAAAAATTCAATAATTCCAAATCCACAAATTCTGACCCTCTTTTTGTCATACGACGTTTTAGTATATCAAAACCTTGTTCCTGGAATAGCAACACAGTATCAAGATTAGTCCCTGGGCCACACTCTGCATCCTTCAATATCTTCTAATACGTAAAAGATTCCTAATTTTGGACCT

>Glyma.11g034500.3 sequence-type=transcript locus=Glyma.11g034500 ID=Glyma.11g034500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTATTTAGGATGAACCCATTATCCTAGTGGTGAATCCCATCATAAAACCATTATCATTCACCACTTTATAACTGGATTGATATCTCAAGTTATTCTTGAAGGTCTATGGCTGGAAGGGTTTATGGCACTTGCTGCAATTGGTGACACAAATATTGGGTCAATTGAGCTTTTCATTGAGCCCGAACTTCATACAAACAGGCCAAGGAAGAAGTTTCTACATTCAGAGCCTCCTGAAGAACGGATTTATGAATGTGAAGGTTTAGGTAGAATGCTCAAGAAAGGGGATGAGTTAGGTGCTTTCAACATGGGATCAACAGTTGTTCTCGTTTTCCAAGCTCCAATTTCAAAACTCCATGAGGGCGATTCATTTCAAGAGTTCAGGTTCTGTGTTGGACGAGGGGATAGAATTCGTGTTGGCGAGGCTCTAGGGAGGTGGCATAGTTCGTGACAGAGCTATTTCTGTGTGCAGCTTATGAATATCGCTGCCCCTGACTGTTTGTGTTGAAACTTCAAAATATTTTCGATATTTTATATGGAGAATCTTTAGTACCTCTTACTGGAAACCGTGATTAGTAATTGATATTAATGGTACATTGGATATTTTGAGTTTTTGACGGTGTAGATGTTTTATTGCTCATCCAGAAAGCATAGAACCTTTGTGCAGATCCTCCGTTAATCAATTCTAGTGCAGTGTTACAGAAATTTATGGCAAGCAGCTAGCAATGTATATTTACAAACataaaattaagatctatcttatactataaatttcaaaataaataatacaatataGACACTATCATAATGCTTGGGTTAAATTAAAATGTTTTAAGATTAACACATAAATATTGATAGAAAAAATATTATAACCCTCATATCATAAATATTTAACACAATTTTATATCCAAAACTAAATTTCAAGATCGTTACTAGTTGATTCACGCTCATTGTGGTTCACTAAAGTAATTTTCAATTGAAGTAATTTTAGATTTGTCACTATAAACTAAATGAAAAATTCAATAATTCCAAATCCACAAATTCTGACCCTCTTTTTGTCATACGACGTTTTAGTATATCAAAACCTTGTTCCTGGAATAGCAACACAGTATCAAGATTAGTCCCTGGGCCACACTCTGCATCCTTCAATATCTTCTAATACGTAAAAGATTCCTAATTTTGGACCT

Coding sequences of Glyma.11g034500

Limit To All Plant Sequences

>Glyma.11g034500.1 sequence-type=CDS polypeptide=Glyma.11g034500.1.p locus=Glyma.11g034500 ID=Glyma.11g034500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCAAAGAAAGGCCTTTTTTACTGTGTGGTTTACTTGAATCCTGGAGATTACCATCGAATACACTCCCCAGCTGATTGGAACATTCTTGTACGCAGGCATTTTTCTGGTCGTCTTTATCCCTTGAATGAACGTGCTATAAGAACAATTAGAAACCTCTATATTGAGAACGAGAGGGTTATTCTTGAAGGTCTATGGCTGGAAGGGTTTATGGCACTTGCTGCAATTGGTGACACAAATATTGGGTCAATTGAGCTTTTCATTGAGCCCGAACTTCATACAAACAGGCCAAGGAAGAAGTTTCTACATTCAGAGCCTCCTGAAGAACGGATTTATGAATGTGAAGGTTTAGGTAGAATGCTCAAGAAAGGGGATGAGTTAGGTGCTTTCAACATGGGATCAACAGTTGTTCTCGTTTTCCAAGCTCCAATTTCAAAACTCCATGAGGGCGATTCATTTCAAGAGTTCAGGTTCTGTGTTGGACGAGGGGATAGAATTCGTGTTGGCGAGGCTCTAGGGAGGTGGCATAGTTCGTGA

>Glyma.11g034500.2 sequence-type=CDS polypeptide=Glyma.11g034500.2.p locus=Glyma.11g034500 ID=Glyma.11g034500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCAAAGGTCGTCTTTATCCCTTGAATGAACGTGCTATAAGAACAATTAGAAACCTCTATATTGAGAACGAGAGGGTTATTCTTGAAGGTCTATGGCTGGAAGGGTTTATGGCACTTGCTGCAATTGGTGACACAAATATTGGGTCAATTGAGCTTTTCATTGAGCCCGAACTTCATACAAACAGGCCAAGGAAGAAGTTTCTACATTCAGAGCCTCCTGAAGAACGGATTTATGAATGTGAAGGTTTAGGTAGAATGCTCAAGAAAGGGGATGAGTTAGGTGCTTTCAACATGGGATCAACAGTTGTTCTCGTTTTCCAAGCTCCAATTTCAAAACTCCATGAGGGCGATTCATTTCAAGAGTTCAGGTTCTGTGTTGGACGAGGGGATAGAATTCGTGTTGGCGAGGCTCTAGGGAGGTGGCATAGTTCGTGA

>Glyma.11g034500.3 sequence-type=CDS polypeptide=Glyma.11g034500.3.p locus=Glyma.11g034500 ID=Glyma.11g034500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTTGCTGCAATTGGTGACACAAATATTGGGTCAATTGAGCTTTTCATTGAGCCCGAACTTCATACAAACAGGCCAAGGAAGAAGTTTCTACATTCAGAGCCTCCTGAAGAACGGATTTATGAATGTGAAGGTTTAGGTAGAATGCTCAAGAAAGGGGATGAGTTAGGTGCTTTCAACATGGGATCAACAGTTGTTCTCGTTTTCCAAGCTCCAATTTCAAAACTCCATGAGGGCGATTCATTTCAAGAGTTCAGGTTCTGTGTTGGACGAGGGGATAGAATTCGTGTTGGCGAGGCTCTAGGGAGGTGGCATAGTTCGTGA

Predicted protein sequences of Glyma.11g034500

Limit To All Plant Sequences

>Glyma.11g034500.1.p sequence-type=predicted peptide transcript=Glyma.11g034500.1 locus=Glyma.11g034500 ID=Glyma.11g034500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
PKKGLFYCVVYLNPGDYHRIHSPADWNILVRRHFSGRLYPLNERAIRTIRNLYIENERVILEGLWLEGFMALAAIGDTNIGSIELFIEPELHTNRPRKKFLHSEPPEERIYECEGLGRMLKKGDELGAFNMGSTVVLVFQAPISKLHEGDSFQEFRFCVGRGDRIRVGEALGRWHSS*

>Glyma.11g034500.2.p sequence-type=predicted peptide transcript=Glyma.11g034500.2 locus=Glyma.11g034500 ID=Glyma.11g034500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPKGRLYPLNERAIRTIRNLYIENERVILEGLWLEGFMALAAIGDTNIGSIELFIEPELHTNRPRKKFLHSEPPEERIYECEGLGRMLKKGDELGAFNMGSTVVLVFQAPISKLHEGDSFQEFRFCVGRGDRIRVGEALGRWHSS*

>Glyma.11g034500.3.p sequence-type=predicted peptide transcript=Glyma.11g034500.3 locus=Glyma.11g034500 ID=Glyma.11g034500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALAAIGDTNIGSIELFIEPELHTNRPRKKFLHSEPPEERIYECEGLGRMLKKGDELGAFNMGSTVVLVFQAPISKLHEGDSFQEFRFCVGRGDRIRVGEALGRWHSS*

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