SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G12440.2 | AT | adenine phosphoribosyl transferase 4 | JGI | N/A | IEA |
| AT4G22570.1 | AT | adenine phosphoribosyl transferase 3 | JGI | N/A | IEA |
| GO:0006168 | GO-bp | adenine salvage | EnsemblGenomes | N/A | IEA |
| GO:0009116 | GO-bp | nucleoside metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009116 | GO-bp | nucleoside metabolic process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0003999 | GO-mf | adenine phosphoribosyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1712 | KOG | Adenine phosphoribosyl transferases | JGI | N/A | IEA |
| PTHR11776 | Panther | ADENINE PHOSPHORIBOSYLTRANSFERASE | JGI | N/A | IEA |
| PF00156 | PFAM | Phosphoribosyl transferase domain | JGI | N/A | IEA |
| PWY-5043 | SoyCyc9 | purine nucleosides salvage II (plant) | Plant Metabolic Network | ISS | |
| PWY-6605 | SoyCyc9 | adenine and adenosine salvage II | Plant Metabolic Network | ISS | |
| GN7V-63208 | SoyCyc9-rxn | adenine phosphoribosyltransferase | Plant Metabolic Network | ISS |
|
Glyma.11g031200 not represented in the dataset |
Glyma.11g031200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g210800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g03400 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g031200.2 sequence-type=transcript locus=Glyma.11g031200 ID=Glyma.11g031200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ACCTCtcttattgttgttctcttcttcttttcttgtttccttttccattcttctttttctctctGTACTCAAACTCACTTCCCCACTTATTTATACAATGTCGGCTTACAAAGACCAGGATACCCGTCTTCATGGCATCAAAACTAAGATTCGTGTCGTCCCCAATTTCCCCAAATCCGGTTCGTTTTCTCCCCTTTCCTTTTTTGTTGTTTTAAACTTCTGTTTTTTTTTAATATTTTTGTTTTCCGACTAAGAAACCAAAGCCTTTGAATTCATATTTAGTTTGACTTCCGTTTTTCAATTTCTAGAAAGTCTTCTTCGGAGGTTTCGttttttttttttttcagtttcaatggtttttttttttGCAACGGCAGGTATTATGTTCCAAGACATTACTACTCTATTGCTTGATCCCAAAGCATTTAAGGACACAATAGATTTGTTCGTTGAGCGGTACAAGGGCAAAAACATTTCTGTTGTTGCAGGAATTGAAGCTCGAGGTTTTATTTTTGGTCCTCCCATTGCGCTGGCTATAGGAGCAAAGTTTGTACCATTGAGGAAACCAAAGAAGTTGCCTGGAAAAGTTATTTCTCAAGAATATATTCTGGAATATGGAAGGGACTGTCTTGAGATGCATGTTGGAGCTGTTGAACCTGGTGAGCGTGCTTTAGTGGTTGATGATTTGATTGCAACAGGTGGAACACTCTGTGCAGCTATGGACTTGTTAGAACGTGTGGGAGCAGAAGTGGTGGAGTGTGCATGTGTAATTGAATTACCAGAATTGAAGGGTCGTGAACGTTTGAACGGGAAGCCCTTGTACGTGTTGGTTGAATATGTGGAGATATGATGATTATGAAGTGTGCAAAAGAATATTAAGATGTAGATTTGGGAGATGATGTGTCTTTCAGTGGGTGCTTTCCCATTCGGATTCCAATTCTAGCTTGTAGTAGGAACGATCAAATCAAATTAATGATGCATTTGTATGACCCACTCTTATGGGTCTCGTCTTCTCATCTCTGCTTCCTCACTCTTTTTCGAATAAAATTAATATCTTTGGCTACAAGAATATACTTGTAGATATTTTGCATGACGAAATCCAACATGGACTCCAGAACGCCCTGTAA
>Glyma.11g031200.1 sequence-type=CDS polypeptide=Glyma.11g031200.1.p locus=Glyma.11g031200 ID=Glyma.11g031200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGGCTTACAAAGACCAGGATACCCGTCTTCATGGCATCAAAACTAAGATTCGTGTCGTCCCCAATTTCCCCAAATCCGGTATTATGTTCCAAGACATTACTACTCTATTGCTTGATCCCAAAGCATTTAAGGACACAATAGATTTGTTCGTTGAGCGGTACAAGGGCAAAAACATTTCTGTTGTTGCAGGAATTGAAGCTCGAGGTTTTATTTTTGGTCCTCCCATTGCGCTGGCTATAGGAGCAAAGTTTGTACCATTGAGGAAACCAAAGAAGTTGCCTGGAAAAGTTATTTCTCAAGAATATATTCTGGAATATGGAAGGGACTGTCTTGAGATGCATGTTGGAGCTGTTGAACCTGGTGAGCGTGCTTTAGTGGTTGATGATTTGATTGCAACAGGTGGAACACTCTGTGCAGCTATGGACTTGTTAGAACGTGTGGGAGCAGAAGTGGTGGAGTGTGCATGTGTAATTGAATTACCAGAATTGAAGGGTCGTGAACGTTTGAACGGGAAGCCCTTGTACGTGTTGGTTGAATATGTGGAGATATGA >Glyma.11g031200.2 sequence-type=CDS polypeptide=Glyma.11g031200.2.p locus=Glyma.11g031200 ID=Glyma.11g031200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTTTTTTTTTTGCAACGGCAGGTATTATGTTCCAAGACATTACTACTCTATTGCTTGATCCCAAAGCATTTAAGGACACAATAGATTTGTTCGTTGAGCGGTACAAGGGCAAAAACATTTCTGTTGTTGCAGGAATTGAAGCTCGAGGTTTTATTTTTGGTCCTCCCATTGCGCTGGCTATAGGAGCAAAGTTTGTACCATTGAGGAAACCAAAGAAGTTGCCTGGAAAAGTTATTTCTCAAGAATATATTCTGGAATATGGAAGGGACTGTCTTGAGATGCATGTTGGAGCTGTTGAACCTGGTGAGCGTGCTTTAGTGGTTGATGATTTGATTGCAACAGGTGGAACACTCTGTGCAGCTATGGACTTGTTAGAACGTGTGGGAGCAGAAGTGGTGGAGTGTGCATGTGTAATTGAATTACCAGAATTGAAGGGTCGTGAACGTTTGAACGGGAAGCCCTTGTACGTGTTGGTTGAATATGTGGAGATATGA
>Glyma.11g031200.1.p sequence-type=predicted peptide transcript=Glyma.11g031200.1 locus=Glyma.11g031200 ID=Glyma.11g031200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSAYKDQDTRLHGIKTKIRVVPNFPKSGIMFQDITTLLLDPKAFKDTIDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISQEYILEYGRDCLEMHVGAVEPGERALVVDDLIATGGTLCAAMDLLERVGAEVVECACVIELPELKGRERLNGKPLYVLVEYVEI* >Glyma.11g031200.2.p sequence-type=predicted peptide transcript=Glyma.11g031200.2 locus=Glyma.11g031200 ID=Glyma.11g031200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVFFFATAGIMFQDITTLLLDPKAFKDTIDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISQEYILEYGRDCLEMHVGAVEPGERALVVDDLIATGGTLCAAMDLLERVGAEVVECACVIELPELKGRERLNGKPLYVLVEYVEI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
