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Report for Sequence Feature Glyma.11g029600

Feature Type:gene_model
Chromosome:Gm11
Start:2138474
stop:2149522
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g029600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12360.1AT Sec1/munc18-like (SM) proteins superfamily JGI N/AIEA
GO:0006904GO-bp vesicle docking involved in exocytosis EnsemblGenomesN/AIEA
GO:0006904GO-bp vesicle docking involved in exocytosis JGI N/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
KOG1300 KOG Vesicle trafficking protein Sec1 JGI N/AIEA
PTHR11679Panther VESICLE PROTEIN SORTING-ASSOCIATED JGI N/AIEA
PTHR11679:SF5Panther JGI N/AIEA
PF00995PFAM Sec1 family JGI N/AIEA

Expression Patterns of Glyma.11g029600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g029600
ParalogEvidenceComments
Glyma.01g212200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g029600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g03230 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.11g029600
>Glyma.11g029600.2 sequence-type=transcript locus=Glyma.11g029600 ID=Glyma.11g029600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGAAGCTTCAATTGAATTTTGCAATTTGTTTGGACAATTCTCCAACACGTCATGAATCATGATTGATCAGTTTTGGTTTAAATTTTTTATAACAATAATTGAAAAATCAAATATAGTGCATGGGGTATTAAACTCTTTTCACATTCAAATTAAATCCTTTTCGTTCGTTCTTTTTGTTTGTGGGAGCGTACGCTATTCATCATTCATCGTGATCAATCAACGATCCCTGGCTGTGCTCGTCGTCTCTGAAGCGATTTTAATCAAGCGTGAGAGGGCAGCATAGCAAAGCGAACATGTCTATGTCCGATTCCGATTCCTCTTCTTACGCCGGCGCCGACTACAAAAGTTTCAAGCAAATTAGCCGCGAGCGATTATTACATGAAATGCTGAGGTCATCAAAAACAGGGGATTCCAAATCAACTTGGAAGGTATTAATAATGGATAAACTTACTGTGAAGATAATGTCTCACTCATGCAAGATGACTGATATCACTGATGAAGGTGTTTCATTGGTTGAAGACATATACAAGAGAAGGCAGCCATTGCCCACCATGGATGCTATATATTTCATCCAGCCAACCAGAGAAAATGTAATTATGTTTTTGTCAGACATGTCTGGAAGGACACCCTTATACAGGAAGGCATTTGTTTTCTTCAGTTCAGCTATTTCCAAAGAATTAGTTATGGACATTAAGAAAGATACGAAGGTGTTGACTCGATTAGGTGCATTGAGAGAGATGAATTTGGAGTATTTTCCCATAGACAGCCAGGGTTTCATCACAAATAATGAGAGGGCATTAGAGGAGCTATTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAGAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACAATGACTACTTTCCGTGATCTTATTCCTACAAAGCTTGCTGCTGGAGTCTGGGACTGTCTTATGAAATATAAAAAAAGTATACCTAATTTTCCTCAGACAGAGACCTGTGAATTGCTCATTGTTGACAGATCTATTGATCAGATTGCTCCTGTGATACATGAATGGACTTATGATGCCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAAGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAGCTGCACAAATACAACATGGTTCAAAAAGTAGCAGTGAAATGTCAACAAGGGACATACAAAAGATGGTTCAAGCACTTCCACAGTACAGTGAACAAATTGACAAGCTCTCCCTCCATGTAGAGATTGCAGGAAAAATTAATAGAATCATTAGGGAGTCAGGACTACGGGAACTTGGCCAGCTGGAGCAAGATCTTGTTTTTGGAGATGCAACTACAAAAGATGTGATCAAATTTTTTACCATGACAGAAGATATAGCCCATGAAAATAAGTTGCGCCTGTTAATGATTCTTGCATCTGTTTGTCCTGAGAAATTTGAGGGAGAAAAGGGTCAGAATTTGATGAGGCTAGCAAAATTGACAGAAGAGGATATGAACGTTGTTCACAATATGAGAATGCTTGGAGGACAACCAGTTACCAAAAAAAAATTGACCACTGCTTTTGGTCTTAAGTTTGATATCCATAAGAAGCGTGCTGCAAGGAAAGATCGTCCTGGGGAAGAAGAGAAATGGCAGCTATCACGCTTTTATCCCATAATAGAGGAACTCCTTGAAAAACTCACGAAAAATGAATTGTCAAAGGAAGATTATCCATGTTTGAATGATCCAAGTCCATCTTACCATGGCTCACCTTTTTCTGGACCTGTAAACCAAAATCCTCACTCAATGAGATCAAGACGAACACCAACTTGGGCTCGACCACGAGGTTCTGAAGATGGATATTCAAGCGATTCAGTGCTTAGACATGCATCGAGTGATTTCAGGAGGATGGGGCAACGAATTTTTGTATTCATTGTTGGTGGAGCAACCAGATCTGAGCTTAGGGTTTGCCATAAGCTTACCGAAAAGCTAAAGAGGGAAATTATTCTCGGCTCATCAAGTCTTGATGACCCAGCACAATTTATTACGAAATTAAAGATGATAACGACGCATGAGCTTTCATTAGATGATATCCAGATATGATGTTAAGGGTTTGAGAACTAAAATATGAGCTTCTG
Coding sequences of Glyma.11g029600
>Glyma.11g029600.1 sequence-type=CDS polypeptide=Glyma.11g029600.1.p locus=Glyma.11g029600 ID=Glyma.11g029600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTATGTCCGATTCCGATTCCTCTTCTTACGCCGGCGCCGACTACAAAAGTTTCAAGCAAATTAGCCGCGAGCGATTATTACATGAAATGCTGAGGTCATCAAAAACAGGGGATTCCAAATCAACTTGGAAGGTATTAATAATGGATAAACTTACTGTGAAGATAATGTCTCACTCATGCAAGATGACTGATATCACTGATGAAGGTGTTTCATTGGTTGAAGACATATACAAGAGAAGGCAGCCATTGCCCACCATGGATGCTATATATTTCATCCAGCCAACCAGAGAAAATGTAATTATGTTTTTGTCAGACATGTCTGGAAGGACACCCTTATACAGGAAGGCATTTGTTTTCTTCAGTTCAGCTATTTCCAAAGAATTAGTTATGGACATTAAGAAAGATACGAAGGTGTTGACTCGATTAGGTGCATTGAGAGAGATGAATTTGGAGTATTTTCCCATAGACAGCCAGGGTTTCATCACAAATAATGAGAGGGCATTAGAGGAGCTATTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAGAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACAATGACTACTTTCCGTGATCTTATTCCTACAAAGCTTGCTGCTGGAGTCTGGGACTGTCTTATGAAATATAAAAAAAGTATACCTAATTTTCCTCAGACAGAGACCTGTGAATTGCTCATTGTTGACAGATCTATTGATCAGATTGCTCCTGTGATACATGAATGGACTTATGATGCCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAAGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAGCTGCACAAATACAACATGGTTCAAAAAGTAGCAGTGAAATGTCAACAAGGGACATACAAAAGATGGTTCAAGCACTTCCACAGTACAGTGAACAAATTGACAAGCTCTCCCTCCATGTAGAGATTGCAGGAAAAATTAATAGAATCATTAGGGAGTCAGGACTACGGGAACTTGGCCAGCTGGAGCAAGATCTTGTTTTTGGAGATGCAACTACAAAAGATGTGATCAAATTTTTTACCATGACAGAAGATATAGCCCATGAAAATAAGTTGCGCCTGTTAATGATTCTTGCATCTGTTTGTCCTGAGAAATTTGAGGGAGAAAAGGGTCAGAATTTGATGAGGCTAGCAAAATTGACAGAAGAGGATATGAACGTTGTTCACAATATGAGAATGCTTGGAGGACAACCAGTTACCAAAAAAAAATTGACCACTGCTTTTGGTCTTAAGTTTGATATCCATAAGAAGAAGCGTGCTGCAAGGAAAGATCGTCCTGGGGAAGAAGAGAAATGGCAGCTATCACGCTTTTATCCCATAATAGAGGAACTCCTTGAAAAACTCACGAAAAATGAATTGTCAAAGGAAGATTATCCATGTTTGAATGATCCAAGTCCATCTTACCATGGCTCACCTTTTTCTGGACCTGTAAACCAAAATCCTCACTCAATGAGATCAAGACGAACACCAACTTGGGCTCGACCACGAGGTTCTGAAGATGGATATTCAAGCGATTCAGTGCTTAGACATGCATCGAGTGATTTCAGGAGGATGGGGCAACGAATTTTTGTATTCATTGTTGGTGGAGCAACCAGATCTGAGCTTAGGGTTTGCCATAAGCTTACCGAAAAGCTAAAGAGGGAAATTATTCTCGGCTCATCAAGTCTTGATGACCCAGCACAATTTATTACGAAATTAAAGATGATAACGACGCATGAGCTTTCATTAGATGATATCCAGATATGA

>Glyma.11g029600.2 sequence-type=CDS polypeptide=Glyma.11g029600.2.p locus=Glyma.11g029600 ID=Glyma.11g029600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTATGTCCGATTCCGATTCCTCTTCTTACGCCGGCGCCGACTACAAAAGTTTCAAGCAAATTAGCCGCGAGCGATTATTACATGAAATGCTGAGGTCATCAAAAACAGGGGATTCCAAATCAACTTGGAAGGTATTAATAATGGATAAACTTACTGTGAAGATAATGTCTCACTCATGCAAGATGACTGATATCACTGATGAAGGTGTTTCATTGGTTGAAGACATATACAAGAGAAGGCAGCCATTGCCCACCATGGATGCTATATATTTCATCCAGCCAACCAGAGAAAATGTAATTATGTTTTTGTCAGACATGTCTGGAAGGACACCCTTATACAGGAAGGCATTTGTTTTCTTCAGTTCAGCTATTTCCAAAGAATTAGTTATGGACATTAAGAAAGATACGAAGGTGTTGACTCGATTAGGTGCATTGAGAGAGATGAATTTGGAGTATTTTCCCATAGACAGCCAGGGTTTCATCACAAATAATGAGAGGGCATTAGAGGAGCTATTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAGAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACAATGACTACTTTCCGTGATCTTATTCCTACAAAGCTTGCTGCTGGAGTCTGGGACTGTCTTATGAAATATAAAAAAAGTATACCTAATTTTCCTCAGACAGAGACCTGTGAATTGCTCATTGTTGACAGATCTATTGATCAGATTGCTCCTGTGATACATGAATGGACTTATGATGCCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAAGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAGCTGCACAAATACAACATGGTTCAAAAAGTAGCAGTGAAATGTCAACAAGGGACATACAAAAGATGGTTCAAGCACTTCCACAGTACAGTGAACAAATTGACAAGCTCTCCCTCCATGTAGAGATTGCAGGAAAAATTAATAGAATCATTAGGGAGTCAGGACTACGGGAACTTGGCCAGCTGGAGCAAGATCTTGTTTTTGGAGATGCAACTACAAAAGATGTGATCAAATTTTTTACCATGACAGAAGATATAGCCCATGAAAATAAGTTGCGCCTGTTAATGATTCTTGCATCTGTTTGTCCTGAGAAATTTGAGGGAGAAAAGGGTCAGAATTTGATGAGGCTAGCAAAATTGACAGAAGAGGATATGAACGTTGTTCACAATATGAGAATGCTTGGAGGACAACCAGTTACCAAAAAAAAATTGACCACTGCTTTTGGTCTTAAGTTTGATATCCATAAGAAGCGTGCTGCAAGGAAAGATCGTCCTGGGGAAGAAGAGAAATGGCAGCTATCACGCTTTTATCCCATAATAGAGGAACTCCTTGAAAAACTCACGAAAAATGAATTGTCAAAGGAAGATTATCCATGTTTGAATGATCCAAGTCCATCTTACCATGGCTCACCTTTTTCTGGACCTGTAAACCAAAATCCTCACTCAATGAGATCAAGACGAACACCAACTTGGGCTCGACCACGAGGTTCTGAAGATGGATATTCAAGCGATTCAGTGCTTAGACATGCATCGAGTGATTTCAGGAGGATGGGGCAACGAATTTTTGTATTCATTGTTGGTGGAGCAACCAGATCTGAGCTTAGGGTTTGCCATAAGCTTACCGAAAAGCTAAAGAGGGAAATTATTCTCGGCTCATCAAGTCTTGATGACCCAGCACAATTTATTACGAAATTAAAGATGATAACGACGCATGAGCTTTCATTAGATGATATCCAGATATGA
Predicted protein sequences of Glyma.11g029600
>Glyma.11g029600.1.p sequence-type=predicted peptide transcript=Glyma.11g029600.1 locus=Glyma.11g029600 ID=Glyma.11g029600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSMSDSDSSSYAGADYKSFKQISRERLLHEMLRSSKTGDSKSTWKVLIMDKLTVKIMSHSCKMTDITDEGVSLVEDIYKRRQPLPTMDAIYFIQPTRENVIMFLSDMSGRTPLYRKAFVFFSSAISKELVMDIKKDTKVLTRLGALREMNLEYFPIDSQGFITNNERALEELFGDEENNHKGVTCLNVMAKRIATVFASLREFPSVRFRAAKSLDATTMTTFRDLIPTKLAAGVWDCLMKYKKSIPNFPQTETCELLIVDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKSGGPAERKEVLLEDHDPIWLELRHAHIAYASEQLHEKMTNFISKNKAAQIQHGSKSSSEMSTRDIQKMVQALPQYSEQIDKLSLHVEIAGKINRIIRESGLRELGQLEQDLVFGDATTKDVIKFFTMTEDIAHENKLRLLMILASVCPEKFEGEKGQNLMRLAKLTEEDMNVVHNMRMLGGQPVTKKKLTTAFGLKFDIHKKKRAARKDRPGEEEKWQLSRFYPIIEELLEKLTKNELSKEDYPCLNDPSPSYHGSPFSGPVNQNPHSMRSRRTPTWARPRGSEDGYSSDSVLRHASSDFRRMGQRIFVFIVGGATRSELRVCHKLTEKLKREIILGSSSLDDPAQFITKLKMITTHELSLDDIQI*

>Glyma.11g029600.2.p sequence-type=predicted peptide transcript=Glyma.11g029600.2 locus=Glyma.11g029600 ID=Glyma.11g029600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSMSDSDSSSYAGADYKSFKQISRERLLHEMLRSSKTGDSKSTWKVLIMDKLTVKIMSHSCKMTDITDEGVSLVEDIYKRRQPLPTMDAIYFIQPTRENVIMFLSDMSGRTPLYRKAFVFFSSAISKELVMDIKKDTKVLTRLGALREMNLEYFPIDSQGFITNNERALEELFGDEENNHKGVTCLNVMAKRIATVFASLREFPSVRFRAAKSLDATTMTTFRDLIPTKLAAGVWDCLMKYKKSIPNFPQTETCELLIVDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKSGGPAERKEVLLEDHDPIWLELRHAHIAYASEQLHEKMTNFISKNKAAQIQHGSKSSSEMSTRDIQKMVQALPQYSEQIDKLSLHVEIAGKINRIIRESGLRELGQLEQDLVFGDATTKDVIKFFTMTEDIAHENKLRLLMILASVCPEKFEGEKGQNLMRLAKLTEEDMNVVHNMRMLGGQPVTKKKLTTAFGLKFDIHKKRAARKDRPGEEEKWQLSRFYPIIEELLEKLTKNELSKEDYPCLNDPSPSYHGSPFSGPVNQNPHSMRSRRTPTWARPRGSEDGYSSDSVLRHASSDFRRMGQRIFVFIVGGATRSELRVCHKLTEKLKREIILGSSSLDDPAQFITKLKMITTHELSLDDIQI*






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