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Report for Sequence Feature Glyma.11g029500

Feature Type:gene_model
Chromosome:Gm11
Start:2133666
stop:2137631
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g029500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12370.2AT photolyase 1 JGI N/AIEA
GO:0000719GO-bp photoreactive repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0003904GO-mf deoxyribodipyrimidine photo-lyase activity EnsemblGenomesN/AIEA
GO:0003913GO-mf DNA photolyase activity JGI N/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
KOG0133 KOG Deoxyribodipyrimidine photolyase/cryptochrome JGI N/AIEA
PTHR10211Panther DEOXYRIBODIPYRIMIDINE PHOTOLYASE JGI N/AIEA
PF00875PFAM DNA photolyase JGI N/AIEA
PF03441PFAM FAD binding domain of DNA photolyase JGI N/AIEA

Proteins Associated with Glyma.11g029500
LocusGene SymbolProtein Name
PHR CPD photolyase

Expression Patterns of Glyma.11g029500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g029500
ParalogEvidenceComments
Glyma.01g212300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g029500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g03220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g029500
>Glyma.11g029500.1 sequence-type=CDS polypeptide=Glyma.11g029500.1.p locus=Glyma.11g029500 ID=Glyma.11g029500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCCACAGCGTCGCCGATGACGGTTCAGGCGGGTCGGGTTCGGACCCTGAAAGAAGGTTCTCGCGGAGAATCGGGTTTGGGTCCGGTCGTGTACTGGATGTTCAGAGACCAACGTGTGACAGACAATTGGGCTCTGATCCACGCTGTTGCTGAGGCCAACAAAGCCAACGTTCCCGTTGCCGTTGTTTTCAATCTCTTCCACACCTTTCTTGGCGCCAAATCCCGTCATTTAGGGTTCATGCTCAGGGGCTTGCGCCAATTGTGCCACCGTATGCAACACTCTCTTCAAATCCCCTTTTTCTTGTTCCAGGGAGAGGCAGAGGAGACAGTGCCAAAGTTTCTTAGAGAATGTGGAGCTTCACTTTTGGTGACGGATTTCTCACCTTTGCGGGAAGTACGGAGGTGTAAAGAAGAGATATGCAAGAGGGTAAGCGATTCGGTTGCTGTGCATGAAGTGGATGCTCACAACGTTGTGCCCCTTTGGGTTGCCTCTGATAAATTGGAGTACAGTGCTAGGACCATCAGGGCGAAGATAACCAAAAGGCTTTCTGACTATCTCGTTGATTTCCCTGACATTGAAGTTGAGCCACCAGCTGGGAAGTGGGTGGCTACTGAGAACCATTCCATTGACTGGGATGATCTCATTGCTGATGTGTTAAGGAGAGGAGCAGAGGTTCCTGAAGTTGATTGGTGTGAGCCAGGGGAAATTGCCGCAAGTGAAGTATTAATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAAAGGTTATTCCCTGGACCGCAACAACCCGTGCCACCCCAATGCGCTTTCTGGCTTATCTCCCTATTTGCACTTTGGACAGATATCTGCTCAGCGATGTGCTTTAGAAGCACGTAAGCGGCGAAATTCACATCCTCAAGCAATTGATGCTTTCTTGGAGGAGTTGATTGTGCGGAGAGAGCTTGCTGATAACTATTGCTTCTACCAGCCTCATTATGATTCATTAAAAGGAGCATGGGCATGGGCTCAGAACACCTTAACTGAACATGCCACTGATAAGCGAGAACATATTTACACGAAGGAGCAGTTGGAGAAGGCACAGACAGCTGATCCTCTCTGGAATGCTTCTCAGCTGGAGATGGTTCACTATGGGAAAATGCATGGTTTTATGAGAATGTATTGGGCAAAGAAGATACTTGAGTGGACACGAGGACCTGAAGAAGCCCTTGAGATATCTTTGTATTTAAATGACAAGTATGAATTAGATGGGAGAGATCCAAATGGTTATGTTGGCTGCATGTGGTCAATATGTGGGGTTCATGATCAGGGTTGGAAAGAGCGGCCCATTTTTGGGAAAATTCGATACATGAACTATGCAGGCTGCAAAAGAAAATTTGATGTCGATAAATACATTGCATATGTCAATAAATTAGTTCGTGAGCTCAAAAAGAGGAAGGCTGAAAACTTGCTATCTCAAAAGGAGAAAGTAGTTCGCAGTTGTGATCCTGAAGATTGA
Predicted protein sequences of Glyma.11g029500
>Glyma.11g029500.1.p sequence-type=predicted peptide transcript=Glyma.11g029500.1 locus=Glyma.11g029500 ID=Glyma.11g029500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTASPMTVQAGRVRTLKEGSRGESGLGPVVYWMFRDQRVTDNWALIHAVAEANKANVPVAVVFNLFHTFLGAKSRHLGFMLRGLRQLCHRMQHSLQIPFFLFQGEAEETVPKFLRECGASLLVTDFSPLREVRRCKEEICKRVSDSVAVHEVDAHNVVPLWVASDKLEYSARTIRAKITKRLSDYLVDFPDIEVEPPAGKWVATENHSIDWDDLIADVLRRGAEVPEVDWCEPGEIAASEVLMGSKNGFLTKRLKGYSLDRNNPCHPNALSGLSPYLHFGQISAQRCALEARKRRNSHPQAIDAFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLTEHATDKREHIYTKEQLEKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGYVGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRELKKRKAENLLSQKEKVVRSCDPED*






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