Glyma.11g021700

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Report for Sequence Feature Glyma.11g021700

Feature Type:	gene_model
Chromosome:	Gm11
Start:	1543164
stop:	1545075
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g021700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25740.1	AT	RNA binding Plectin/S10 domain-containing protein	JGI	N/A	IEA
GO:0000028	GO-bp	ribosomal small subunit assembly	EnsemblGenomes	N/A	IEA
GO:0022627	GO-cc	cytosolic small ribosomal subunit	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003735	GO-mf	structural constituent of ribosome	EnsemblGenomes	N/A	IEA
KOG3344	KOG	40s ribosomal protein s10	JGI	N/A	IEA
PTHR12146	Panther	40S RIBOSOMAL PROTEIN S10	JGI	N/A	IEA
PF03501	PFAM	Plectin/S10 domain	JGI	N/A	IEA

Expression Patterns of Glyma.11g021700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g021700 not represented in the dataset	Glyma.11g021700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g021700

Paralog	Evidence	Comments
Glyma.01g222100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g021700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g02410	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g021700

Limit To All Plant Sequences

>Glyma.11g021700.2 sequence-type=transcript locus=Glyma.11g021700 ID=Glyma.11g021700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGGGAAGAAAGCAGAATTAGGGTTTATATCGCGTATAGTGTGGTAGCAGCAGCTGAGCTTGTTTCCGTCGCCGCTTCACCCACCGTAGCAACCATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGTAAGCTTTTTGCAATATATCAATTAACATTATTTGCTATTATTCTATATCAATCAATATTATTGTGTTTCTATTTGTTTATTTATTGTTTGCTATTATTCTATATATGTTCAGTATCTTTTCTTCTACGATTGTGTGTGTTATTACTTTGCGCTCTAGTTTTGATTTGTTTCTATTTGTATATCTAGTTTTGATTACAAATTTGACTCTGCCCGTATTTTTCGTGTTTCTAATAACATTGGTATCTCTCCTTGAAAAATTACTATAATGTCTATATATCTTTTGTGGGTTCAAATGTGCATATTCTAGCATTCAAACGATGGGGTAAGGCATTTAATTGTGTTAATAAAATCAAGCTTAGAGCTGCACCTTTTGTTTTCAATTTGCCAACTGTAGTTATGTAGTTTTCTGTATCGGATTATGTTTCGTTGTTAGCTACATTTTTATGGTCTTCTTTATATTGTTAGGAAGGCGGGAGGGGTGTTGCACTGACTTTTTGTCCAAATAATGTTGACTGTAGTTGCAAGTTTATTTGGATGATTTAAACCCAAATTCTTCTTGTTTACGTAATGCTATTACTGTTTTCTCTTATATCTGTGAAGTAGCATTGTCCTGATTTTGATAACGAATTTGTAGAAGTTAGTTCTTGTGATGGCCTACTTTGACATGTCAAGTTTTCCTGATATGTATATGTTTTCACTCTGTTTGCAGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTAAATATAATGTTATGTGCTCTAATTTTTGCAGTTTTGGCTGTCATTGGAGTTAATAGTAGTTGTTCCCCTCTCCCAATAGTTGCTCATCTGACAATTTACTTACTCGGTTATTTATGCAATGAATATTTTGAATTGAGTGTTTCTGTTATAATAGGTTGACAATATTGTTTCTGTTGGATGATTGATGGTTTAGAAAGTGAAAATTGGCTGGGAAAAAGCCTTTATTTTTATATCAAAAAGTAACTTTATTTCTGATGGTTTATATATTGTTGCGAATTTTTAAGACAATAAATTTAACATGTGAC

>Glyma.11g021700.3 sequence-type=transcript locus=Glyma.11g021700 ID=Glyma.11g021700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGGGAAGAAAGCAGAATTAGGGTTTATATCGCGTATAGTGTGGTAGCAGCAGCTGAGCTTGTTTCCGTCGCCGCTTCACCCACCGTAGCAACCATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTAAATATAATGTTATGTGCTCTAATTTTTGCAGTTTTGGCTGTCATTGGAGTTAATAGTAGTTGTTCCCCTCTCCCAATAGTTGCTCATCTGACAATTTACTTACTCGGTTATTTATGCAATGAATATTTTGAATTGAGTGTTTCTGTTATAATAGGTTGACAATATTGTTTCTGTTGGATGATTGATGGTTTAGAAAGTGAAAATTGGCTGGGAAAAAGCCTTTATTTTTATATCAAAAAGTAACTTTATTTCTGATGGTTTATATATTGTTGCGAATTTTTAAGACAATAAATTTAACATGTGAC

Coding sequences of Glyma.11g021700

Limit To All Plant Sequences

>Glyma.11g021700.1 sequence-type=CDS polypeptide=Glyma.11g021700.1.p locus=Glyma.11g021700 ID=Glyma.11g021700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTAA

>Glyma.11g021700.2 sequence-type=CDS polypeptide=Glyma.11g021700.2.p locus=Glyma.11g021700 ID=Glyma.11g021700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGTAAGCTTTTTGCAATATATCAATTAA

>Glyma.11g021700.3 sequence-type=CDS polypeptide=Glyma.11g021700.3.p locus=Glyma.11g021700 ID=Glyma.11g021700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTAA

Predicted protein sequences of Glyma.11g021700

Limit To All Plant Sequences

>Glyma.11g021700.1.p sequence-type=predicted peptide transcript=Glyma.11g021700.1 locus=Glyma.11g021700 ID=Glyma.11g021700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGGPGGRPGFGRGSGGYGAPTSSNIP*

>Glyma.11g021700.2.p sequence-type=predicted peptide transcript=Glyma.11g021700.2 locus=Glyma.11g021700 ID=Glyma.11g021700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGVSFLQYIN*

>Glyma.11g021700.3.p sequence-type=predicted peptide transcript=Glyma.11g021700.3 locus=Glyma.11g021700 ID=Glyma.11g021700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGGPGGRPGFGRGSGGYGAPTSSNIP*

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