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Report for Sequence Feature Glyma.11g021300

Feature Type:gene_model
Chromosome:Gm11
Start:1512657
stop:1515641
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g021300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63990.1AT sporulation 11-2 JGI N/AIEA
GO:0000706GO-bp meiotic DNA double-strand break processing EnsemblGenomesN/AIEA
GO:0000737GO-bp DNA catabolic process, endonucleolytic EnsemblGenomesN/AIEA
GO:0006259GO-bp DNA metabolic process EnsemblGenomesN/AIEA
GO:0006259GO-bp DNA metabolic process JGI N/AIEA
GO:0007131GO-bp reciprocal meiotic recombination EnsemblGenomesN/AIEA
GO:0009553GO-bp embryo sac development EnsemblGenomesN/AIEA
GO:0009555GO-bp pollen development EnsemblGenomesN/AIEA
GO:0042138GO-bp meiotic DNA double-strand break formation EnsemblGenomesN/AIEA
GO:0048316GO-bp seed development EnsemblGenomesN/AIEA
GO:0051026GO-bp chiasma assembly EnsemblGenomesN/AIEA
GO:0051321GO-bp meiotic cell cycle EnsemblGenomesN/AIEA
GO:0000228GO-cc nuclear chromosome EnsemblGenomesN/AIEA
GO:0005694GO-cc chromosome EnsemblGenomesN/AIEA
GO:0005694GO-cc chromosome JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003918GO-mf DNA topoisomerase type II (ATP-hydrolyzing) activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016889GO-mf endodeoxyribonuclease activity, producing 3'-phosphomonoesters EnsemblGenomesN/AIEA
KOG2795 KOG Catalytic subunit of the meiotic double strand break transesterase JGI N/AIEA
PTHR10848Panther MEIOTIC RECOMBINATION PROTEIN SPO11 JGI N/AIEA
PF04406PFAM Type IIB DNA topoisomerase JGI N/AIEA

Expression Patterns of Glyma.11g021300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g021300 not represented in the dataset
Glyma.11g021300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.11g021300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g02370 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.11g021300
>Glyma.11g021300.2 sequence-type=transcript locus=Glyma.11g021300 ID=Glyma.11g021300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATATTTCTTTCCTCTAGAATGAGTGTCGTTTATGTGTGTAGTTCAAACTTAACCGACATGAACTGTGTTTGGCAGTACAAAGCCCTTTCTTATTAGAGCATTGCGCGCCAATTATACTTGAGTTACCGCGAATTCTATAGATTTCGCCTCCGATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGCATAGGAATGGGCCTAGAGGCATACCGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCTTGCTGCCGAACCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGATAATTACAAGGAAGAAGTGGCCTTGATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTATACTTTAATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATGTATAATTCATTTTTGATATATATGTTTAAAACCATAAAATACAAAGCTGAAGCAAATAGGTAGACTTTTCTGCATAATCATCAATAAAACGCATATGAAGTAGGGAACATGTTTTTCTCATAATTTTCCTTGTTTATTTAAGCTTCCAAATATTTAAATTATTTTATTCAAAACTAGACA

>Glyma.11g021300.3 sequence-type=transcript locus=Glyma.11g021300 ID=Glyma.11g021300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATATTTCTTTCCTCTAGAATGAGTGTCGTTTATGTGTGTAGTTCAAACTTAACCGACATGAACTGTGTTTGGCAGTACAAAGCCCTTTCTTATTAGAGCATTGCGCGCCAATTATACTTGAGTTACCGCGAATTCTATAGATTTCGCCTCCGATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGGTACTGTGTACACCAGTTTATAGGATAGAGAATTCAATAACCTGGAGCTTTTACAGGATGCTAACAAAAGTTTTTTTATTCATACTTGACACTACCATGTAATATATGGTAGTCTTGATCCATTGATATGAGTGCTTTAGTATCTAAAGTTTCAAAAGTTCAAATACA
Coding sequences of Glyma.11g021300
>Glyma.11g021300.1 sequence-type=CDS polypeptide=Glyma.11g021300.1.p locus=Glyma.11g021300 ID=Glyma.11g021300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGATTTCTTCTTTACCGAATCAGTAAAGCTTTTCCTGACTTGCCAATTCTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGCATAGGAATGGGCCTAGAGGCATACCGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCTTGCTGCCGAACCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGATAATTACAAGGAAGAAGTGGCCTTGATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTATACTTTAATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATGTATAA

>Glyma.11g021300.2 sequence-type=CDS polypeptide=Glyma.11g021300.2.p locus=Glyma.11g021300 ID=Glyma.11g021300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGAAGCATAGGAATGGGCCTAGAGGCATACCGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGGCATGATCTACCCTTGCTGCCGAACCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGATAATTACAAGGAAGAAGTGGCCTTGATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTATACTTTAATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATGTATAA

>Glyma.11g021300.3 sequence-type=CDS polypeptide=Glyma.11g021300.3.p locus=Glyma.11g021300 ID=Glyma.11g021300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGATCTTCGGAATTTGACGCTAAAATTCTTCTCCGATCAAGAGCTTTGCTATGCTGATATCGTCCCTCTTGCTCAGGTCCGAGCCAGAATTGAAGTCTCTGTCCTCAATTTTCTCAAAATATTAAATGCCTCCAGCCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAATATAGCAATAGTCGAGTGAATCATGGCCTGTTGACTGAACTATCACGTGTTTTTCTCTCCAATTCCGTATCGACGAGGTCTCTGATGAGACCTAACGCAGCAAAGGCTTTTGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACTCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACACCTGTTTCCTTCTCAAACACATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATTCAGTCTTGGAATTATGGCATCTAGTCGAGGACTTGTAGCTGGCCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTTGATTGCTCTTTATGCGGTTCTTCTGGATTTGCAATATCTGGTGACTTGAATTTGTTGGATAGTTTGGTTCTAAATGCAGATGCTCGGTACGTTATAATTGTGGAAAAGCATGCAATATTTCAACGGCTTACTGAGGATCGTTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAAGGTTACCCAGATATTGCCACAAGGTACTGTGTACACCAGTTTATAGGATAG
Predicted protein sequences of Glyma.11g021300
>Glyma.11g021300.1.p sequence-type=predicted peptide transcript=Glyma.11g021300.1 locus=Glyma.11g021300 ID=Glyma.11g021300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDLRNLTLKFFSDQELCYADIVPLAQVRARIEVSVLNFLKILNASSPAISDLPLIQRKYSNSRVNHGLLTELSRVFLSNSVSTRSLMRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTHVNRTIQDLVALLRCSRFSLGIMASSRGLVAGRLILQEPGKEAVDCSLCGSSGFAISGDLNLLDSLVLNADARYVIIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDIATRFLLYRISKAFPDLPILALVDWNPAGLAILCTFKFGSIGMGLEAYRYACNVKWLGLRGHDLPLLPNQSFVPLKPKDLQIAQSLMSSGILQDNYKEEVALMVQSGRRAEIEALYFNGYDYLGKYIAKKIVQSDYV*

>Glyma.11g021300.2.p sequence-type=predicted peptide transcript=Glyma.11g021300.2 locus=Glyma.11g021300 ID=Glyma.11g021300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDLRNLTLKFFSDQELCYADIVPLAQVRARIEVSVLNFLKILNASSPAISDLPLIQRKYSNSRVNHGLLTELSRVFLSNSVSTRSLMRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTHVNRTIQDLVALLRCSRFSLGIMASSRGLVAGRLILQEPGKEAVDCSLCGSSGFAISGDLNLLDSLVLNADARYVIIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDIATRNPAGLAILCTFKFGSIGMGLEAYRYACNVKWLGLRGHDLPLLPNQSFVPLKPKDLQIAQSLMSSGILQDNYKEEVALMVQSGRRAEIEALYFNGYDYLGKYIAKKIVQSDYV*

>Glyma.11g021300.3.p sequence-type=predicted peptide transcript=Glyma.11g021300.3 locus=Glyma.11g021300 ID=Glyma.11g021300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDLRNLTLKFFSDQELCYADIVPLAQVRARIEVSVLNFLKILNASSPAISDLPLIQRKYSNSRVNHGLLTELSRVFLSNSVSTRSLMRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTHVNRTIQDLVALLRCSRFSLGIMASSRGLVAGRLILQEPGKEAVDCSLCGSSGFAISGDLNLLDSLVLNADARYVIIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDIATRYCVHQFIG*






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