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Report for Sequence Feature Glyma.11g020000

Feature Type:gene_model
Chromosome:Gm11
Start:1404609
stop:1408542
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g020000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64150.1AT Uncharacterized protein family (UPF0016) JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
KOG2881 KOG Predicted membrane protein JGI N/AIEA
PTHR12608Panther TRANSMEMBRANE PROTEIN HTP-1 RELATED JGI N/AIEA
PF01169PFAM Uncharacterized protein family UPF0016 JGI N/AIEA

Expression Patterns of Glyma.11g020000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g020000 not represented in the dataset
Glyma.11g020000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g020000
ParalogEvidenceComments
Glyma.01g223500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.11g020000
>Glyma.11g020000.1 sequence-type=CDS polypeptide=Glyma.11g020000.1.p locus=Glyma.11g020000 ID=Glyma.11g020000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCTCTTCGGCTTCCTCACACTTCAAGATTCTTATCCAGCACTTGCTTCTTCTTCTGACATTTCCACTATATTTGGGGATATTGGTGACTTAAGCACAGGTTTTGCTTCAGCGTTTCTGCTAATATTTTTCTCTGAACTGGGAGACAAGACCTTTTTCATTGCAGCGCTACTAGCAGCTAGGAATTCAGCTGGTGTTGTTTTTATTGGAACATTTGGCGCACTTGCGGCAATGACTCTGATATCTGTTGTCCTTGGACGAACTTTTCATTATGTTGATGAAATCTTGCCATTCAGTTTGTTGACGTTCTTCCTTGTTTTCTATAAATGTCGTTACTTCTGTGCCTTCCTTTGGGTTCGGGTGTACTTTGGGGTCTCTACCCTGCTGGATGCCTCATCCAGTGATAGCCAAAAATCCGATGAAGAGCAGAAGGAGATAATATTTGAGCTAGCAGTTTCCGATTTTTCTGGAAATGGGGCTGGGATACTATCAGCTGCCAGCACAGTTGCCAGTACTTTTCTCTTGGTTTTTGTTGCTGAATGGGGCGATAAGTCATTTTTCTCCACAATTGCCCTAGCAGCAGCTTCTTCTCCCCTTGGAGTCATAGCTGGAGCACTGGCCGGTCATGGTGTTGCAACTTTGCTAGCTGTACTTGGGGGTTCTTTACTTGGGACGTATTTGTCAGAGAAGGTTATTGCCTACATCGGAGGTGTTCTCTTTCTCGTCTTTGCGGCAATAACCTTATTTGAAATTGTGCAATAG
Predicted protein sequences of Glyma.11g020000
>Glyma.11g020000.1.p sequence-type=predicted peptide transcript=Glyma.11g020000.1 locus=Glyma.11g020000 ID=Glyma.11g020000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLFGFLTLQDSYPALASSSDISTIFGDIGDLSTGFASAFLLIFFSELGDKTFFIAALLAARNSAGVVFIGTFGALAAMTLISVVLGRTFHYVDEILPFSLLTFFLVFYKCRYFCAFLWVRVYFGVSTLLDASSSDSQKSDEEQKEIIFELAVSDFSGNGAGILSAASTVASTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGVATLLAVLGGSLLGTYLSEKVIAYIGGVLFLVFAAITLFEIVQ*






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