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Report for Sequence Feature Glyma.11g018600

Feature Type:gene_model
Chromosome:Gm11
Start:1297668
stop:1302426
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G41770.1AT crooked neck protein, putative / cell cycle protein, putative JGI N/AIEA
GO:0000245GO-bp spliceosomal complex assembly EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing JGI N/AIEA
GO:0000974GO-cc Prp19 complex EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0071010GO-cc prespliceosome EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
GO:0071012GO-cc catalytic step 1 spliceosome EnsemblGenomesN/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
GO:0071014GO-cc post-mRNA release spliceosomal complex EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1915 KOG Cell cycle control protein (crooked neck) JGI N/AIEA
PTHR11246Panther PRE-MRNA SPLICING FACTOR JGI N/AIEA
PTHR11246:SF3Panther CROOKED NECK-LIKE PROTEIN 1 JGI N/AIEA
PF02184PFAM HAT (Half-A-TPR) repeat JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g018600 not represented in the dataset

Glyma.11g018600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.01g224300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma11g02100 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.11g018600.1 sequence-type=CDS polypeptide=Glyma.11g018600.1.p locus=Glyma.11g018600 ID=Glyma.11g018600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCGTCGAAAGATGCAGACCCAAGCCTGGGTTACCTGACTCGCAAGGACACGGAGGTTAAGCTTCCTCGTCCAACCAGGGTCAAGAACAAAACCCCCGCTCCGATTCAAATCACCGCCGAGCAGATTCTCCGCGAGGCACGTGAGCGCCAAGAGGCCGAGATCCGCCCTCCCAAGCAGAAGATCACCGACCCCACCGAGCTCGGCGAGTACCGTCTCCGCAAGCGCAAGGAGTTCGAAGACCTAATCCGCCGCGTTCGATGGAACATCGGCGTCTGGATCAAGTACGCGCAGTGGGAGGAATCTCAGAAGGACTTCAAGCGCGCGCGTTCCGTCTGGGAGAGAGCCTTGGAGGTGGATTACAAGAACCACACACTATGGCTCAAATACGCAGAGGTGGAGATGAAGAACAAGTTCATAAACCACGCGAGGAACGTTTGGGACCGCGCCGTGACGCTTCTGCCCCGGGTGGATCAGTTATGGTACAAGTACATTCACATGGAGGAGATGCTCGGCAATGTCGCCGGTGCCAGGCAGGTTTTCGAGCGGTGGATGAAGTGGACCCCTGACCAGCAGGGATGGCTCTCTTACATCAAGTTTGAATTGAGGTACAATGAAATTGAGCGCGCCAGAGGGATTTTCGAGCGGTTTGTTGAGTGCCACCCTAGGGTTGGGGCTTGGATTCGCTATGCCAAGTTTGAGATGAAGAATGGCGAGGTTGCGAGGTCGAGGAACGTGTACGAGAGAGCCGTGGATAAGCTCTCCGATGACGAGGAAGCAGAGCAGTTGTTTGTTGCTTTTGCCGAGTTTGAGGAAAGGTGTAAGGAGACTGAGCGTGCAAGGGCTATATATAAGTTTGCTCTTGATCATATTCCCAAGGGAAGGGCAGAAGATTTGTATCGTAAGTTTGTCGCATTTGAGAAGCAGTATGGTGACAGGGAAGGGATTGAGGATGCTATTGTTGGGAAGAGAAGGTTTCAGTATGAGGACGAAGTGAAAAAGAATCCTTTAAATTATGATTCCTGGTTCGATTACATAAGGTTGGAAGAAAGTGTGGGGGATAAGGAGAGAATCAGGGAGGTCTATGAGAGGGCTATAGCCAATGTTCCTCCGGCTGAGGAGAAGCGCTACTGGCAGCGCTATATCTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGACATGGAGCGAACAAGGGATGTGTACAAGGAGTGTCTCAATCAGATACCTCACCTAAAGTTCTCGTTTGCAAAGATATGGCTTCTAGCAGCCCAGTTTGAAATACGTCAGCTGAATCTCAAGGCCGCTCGTCAAATATTAGGAAATGCCATTGGAAAGGCTCCTAAAGATAAGATTTTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAATATAGATCGATGCAGAAAGCTGTATGAAAAATATCTGGAGTGGTCGCCTGAAAATTGTTATGCTTGGAGCAAGTATGCAGAACTGGAGAGATCTTTATCTGAGACTGATCGAGCTCGAGCAATTTTTGAGCTTGCAATCGCTCAACCAGCTTTGGACATGCCTGAGCTGTTGTGGAAGGCATACATTAACTTTGAGACTGCTGAGGGTGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGTTAAGTTATGCAGAATTTGAGGCAACAGCTATGGATATGGACAGTTTAGACTTACCAGAAGATGAACAAAAGAAGCAATGCATTCAGTGTGCTAGAAGGGTGTTTGAGCAAGCTCTTAACTACTTCAGATCATCAGCTCCAGATTTGAAAGAAGAAAGGGCAATGCTATTGGAGAAATGGCTCAACATGGAGGCTACGTCTGGAGAGTTGGGTGATGTTAGCTTAGTCCAGTCTAAACTGCCCAAGAAGCTCAAGAAGAGAAGGCATGTTGCCACTGAAGATGGTTCTACTAGAATTGAAGAATTCATCGACTATTTATTCCCCGAGGAAAGCCAGACAACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAATTGTCTTCTGATGATTAA

>Glyma.11g018600.1.p sequence-type=predicted peptide transcript=Glyma.11g018600.1 locus=Glyma.11g018600 ID=Glyma.11g018600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDPTELGEYRLRKRKEFEDLIRRVRWNIGVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWTPDQQGWLSYIKFELRYNEIERARGIFERFVECHPRVGAWIRYAKFEMKNGEVARSRNVYERAVDKLSDDEEAEQLFVAFAEFEERCKETERARAIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVKKNPLNYDSWFDYIRLEESVGDKERIREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYKECLNQIPHLKFSFAKIWLLAAQFEIRQLNLKAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLSETDRARAIFELAIAQPALDMPELLWKAYINFETAEGEFERARALYERLLDRTKHLKVWLSYAEFEATAMDMDSLDLPEDEQKKQCIQCARRVFEQALNYFRSSAPDLKEERAMLLEKWLNMEATSGELGDVSLVQSKLPKKLKKRRHVATEDGSTRIEEFIDYLFPEESQTTNLKILEAAYKWKKQKLSSDD*







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